Fredericiella danica^Ts

Citation

Formal styling

Fredericiella danica^Ts Petriglieri et al., 2023 (valid 2024)

Effective publication

Petriglieri et al., 2023

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:82uy5hy3 (validated)

Canonical URL

https://seqco.de/i:44003

Nomenclature

Rank

Species

Syllabication

da.ni'ca

Etymology

L. fem. adj. danica, Danish

Nomenclatural type

NCBI Assembly: GCA_016713335.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

A species established on the basis of MiGA taxonomic novelty analyses, ANI, 16S rRNA gene phylogenetic reconstruction and phylogenomic analyses.

Classification

Bacteria » Chloroflexota » Caldilineae » Caldilineales » Caldilineaceae » Fredericiella » Fredericiella danica^Ts

Parent

Fredericiella gtdb assigned in Petriglieri et al., 2023

Genomics

Accession

NCBI Assembly:GCA_016713335.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 92.09%
• Contamination: 2.37%
• Quality: 80.24

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

10.0 ×

Source

• BioSample: SAMN16425967
• BioSample: SAMN14825693

Other features

• G+C Content: 59.48%
• Coding Density: 87.4%
• Codon Table: 11
• N50: 94,401 bp
• Contigs: 111
• Largest Contig: 332,278 bp
• Assembly Length: 6,824,975 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

See additional details

Metadata

Outside links and data sources

• GTDB Genome: GCA_016713335.1
• GTDB Tree: s__Fredericiella danica
• Global Biodiversity Information Facility (GBIF)
• Wikispecies: Fredericiella danica (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 5 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Petriglieri, Francesca 8 months ago

Submitted by

Petriglieri, Francesca 6 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Rodriguez-R, Luis M 5 months ago

Date of priority

2024-04-26 11:27 AM (UTC)