Salivita marina^Ts

Citation

Formal styling

Salivita marina^Ts Prabhu et al., 2024

Effective publication

Prabhu et al., 2024

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:sfdglxu8 (validated)

Canonical URL

https://seqco.de/i:46742

Nomenclature

Rank

Species

Syllabication

ma.ri'na

Etymology

L. fem. adj. marina, of the sea, marine

Nomenclatural type

NCBI Assembly: GCA_038144425.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

Inferred to break down a wide range of organic carbon substrates (Chitin, Mucin, Xylan, Cellulose and Starch) as well as carries genes for rTCA cycle to fix inorganic carbon (korABCD). Encodes genes for nitrate uptake (NRT2), thiosulfate oxidation (soxABCDXYZ), sulphate assimilation (cys), phosphorus uptake and regulation (pho, pst), polyphosphate kinase and phosphatase (ppa). Can perform osmoregulation (trkA, nqrF, nhaC) and is possibly motile (fliGMN, motAB). Based on the genome reporting standards for MAGs , the estimated completeness was 91.02%, contamination 1.36%, and the presence of the 5S (110bp), 16S (1,532 bp), and 23S (2,880 bp) rRNA gene and 42 tRNAs. Type genome is defined as “high-quality” draft MAG, with genome size of 3.3Mbps.

Classification

Bacteria » Pseudomonadota » Gammaproteobacteria » Pseudomonadales » Salivitaceae » Salivita » Salivita marina^Ts

Parent

Salivita

Genomics

Accession

NCBI Assembly:GCA_038144425.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 91.02%
• Contamination: 1.36%
• Quality: 84.22

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 100.0%)
• 2 23S rRNAs (up to 100.0%)
• tRNAs for 21 amino acids

Source

• BioSample: SAMN37862236
• BioSample: SAMN38034106

Other features

• G+C Content: 63.0%
• Coding Density: 90.44%
• Codon Table: 11
• N50: 1,052,124 bp
• Contigs: 10
• Largest Contig: 1,098,669 bp
• Assembly Length: 3,035,073 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completeness and contamination were evaluated using CheckM v 1.1.3

Automated checks

Complete

See additional details

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Last modified about 1 month ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_038144425.1
• Wikispecies: Salivita marina (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 4 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Chuvochina, Maria 7 months ago

Submitted by

Chuvochina, Maria 4 months ago

Curators

• Palmer, Marike (nomenclature)
• Valero Tebar, Juan
• Rodriguez-R, Luis M (genomics)

Validated by

Rodriguez-R, Luis M 4 months ago

Date of priority

2024-08-12 01:22 AM (UTC)