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Hepatoplasma crinochetorumTs

Citation

Formal styling
Hepatoplasma crinochetorumTs Wang et al., 2004 (valid 2023)
Effective publication
Wang et al., 2004
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:z6by014f (validated)
Cannonical URL
https://seqco.de/i:83

Nomenclature

Rank
Species
Syllabication
cri.no.che.to'rum
Etymology
N.L. gen. pl. n. crinochetorum, of isopods (Crinocheta)
Nomenclatural type
NCBI Assembly: GCA_000582535.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
Wang et al., 2004: spherical cells (diameter, 0.5 to 0.8 μm); no cell wall and outer membrane; forms stalk-like cytoplasmic appendages at one or two cell poles that attach to host epithelia or are involved in budding. Basis of assignment: 16S ribosomal DNA sequences (accession numbers AY500249 and AY500250 ), hybridization with 16S rRNA-targeted oligonucleotide probe (5′-GTG AAA AAT TCC CTA CTG CTG-3′). Symbiont of P. scaber and other terrestrial isopods belonging to the taxon Crinocheta, located exclusively in the lumen of the hepatopancreas; so far uncultivated.
Notes
Hepatopancreatic symbiont
Classification
Bacteria » Mycoplasmatota » Mollicutes » Mycoplasmatales » Hepatoplasmataceae » Hepatoplasma » Hepatoplasma crinochetorumTs
Parent
Hepatoplasma gtdb

Genomics

Accession
NCBI Assembly:GCA_000582535.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 92.17%
  • Contamination: 0.0%
  • Quality: 92.17
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
350.0 ×
Source
Other features
  • G+C Content: 22.53%
  • Coding Density: 92.26%
  • Codon Table: 4
  • N50: 657,101 bp
  • Contigs: 1
  • Largest Contig: 657,101 bp
  • Assembly Length: 657,101 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Chuvochina, Maria 12 months ago
Submitted by
Chuvochina, Maria 10 months ago
Curators
Endorsed by
Palmer, Marike 10 months ago
Validated by
Palmer, Marike 10 months ago
Date of priority
2023-08-22 04:20 AM (UTC)

Publications
5

Citation Title
Kawato et al., 2024, Access Microbiology Metagenome-assembled genomes of three Hepatoplasmataceae provide insights into isopod-mollicute symbiosis
Kawato et al., 2023, Metagenome-assembled genomes of three Hepatoplasmataceae provide insights into isopod-mollicute symbiosis
Collingro et al., 2015, Genome Announcements Draft Genome Sequence of “ Candidatus Hepatoplasma crinochetorum” Ps, a Bacterial Symbiont in the Hepatopancreas of the Terrestrial Isopod Porcellio scaber
Leclercq et al., 2014, Genome Biology and Evolution Phylogenomics of “Candidatus Hepatoplasma crinochetorum,” a Lineage of Mollicutes Associated with Noninsect Arthropods
Wang et al., 2004, Applied and Environmental Microbiology “ Candidatus Hepatoplasma crinochetorum,” a New, Stalk-Forming Lineage of Mollicutes Colonizing the Midgut Glands of a Terrestrial Isopod
Effective publication


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