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“Pelagibacter communis”

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Citation

Formal styling
“Pelagibacter communis” corrig. Rappé et al., 2002
Effective publication
Rappé et al., 2002
Corrigendum
Oren et al., 2020 from “Pelagibacter ubique” (sic)
SeqCode status
Automated discovery
Canonical URL
https://seqco.de/i:91 Copy

Nomenclature

Rank
Species
Syllabication
com.mu'nis
Etymology
L. masc. adj. communis, common
Nomenclatural type
NCBI Assembly: GCA_000012345.1
Reference strain
Strain sc|0038908: HTCC 1062 Lookup StrainInfo

Taxonomy

Classification
Bacteria » Pseudomonadota » Alphaproteobacteria » “Pelagibacterales” » “Pelagibacteraceae” » “Pelagibacter” » “Pelagibacter communis”
Parent
“Pelagibacter” gtdb
Pseudonyms
  • Pelagibacter ubique (Original, corrected name)

Genomics

Accession
NCBI Assembly:GCA_000012345.1
Cultures
Strain sc|0038908
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 96.2%
  • Contamination: 0.9%
  • Quality: 91.7
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Source
Other features
  • G+C Content: 29.68%
  • Coding Density: 96.07%
  • Codon Table: 11
  • N50: 1,308,759 bp
  • Contigs: 1
  • Largest Contig: 1,308,759 bp
  • Assembly Length: 1,308,759 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details
Last modified 11 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Excubia bot, created about 6 years ago

Publications
17

Citation Title
Beja, 2012, Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature Faculty Opinions recommendation of Energy starved Candidatus Pelagibacter ubique substitutes light-mediated ATP production for endogenous carbon respiration
Smith et al., 2010, PLoS ONE Transcriptional and Translational Regulatory Responses to Iron Limitation in the Globally Distributed Marine Bacterium Candidatus Pelagibacter ubique
Meyer et al., 2009, BMC Genomics Identification of candidate structured RNAs in the marine organism 'Candidatus Pelagibacter ubique'
Sowell et al., 2008, Applied and Environmental Microbiology Proteomic Analysis of Stationary Phase in the Marine Bacterium “ Candidatus Pelagibacter ubique”
Gilbert et al., 2008, The ISME Journal A rare SAR11 fosmid clone confirming genetic variability in the ‘Candidatus Pelagibacter ubique’ genome
Vergin et al., 2007, Environmental Microbiology High intraspecific recombination rate in a native population of Candidatus Pelagibacter ubique (SAR11)
Rappé et al., 2002, Nature Cultivation of the ubiquitous SAR11 marine bacterioplankton clade
Effective publication


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