SeqCode Registry
cognitis nomina
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Genomes
sc|0003541
JSON
Genome sc|0003541
Name
“Pelagibacter communis”
Database
NCBI Assembly
Accession
GCA_000012345.1
Genomics
Accession
NCBI Assembly:
GCA_000012345.1
Cultures
Strain sc|0038908
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
96.2%
Contamination:
0.9%
Quality:
91.7
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Source
BioSample: SAMN02603690
Other features
G+C Content:
29.68%
Coding Density:
96.07%
Codon Table:
11
N50:
1,308,759 bp
Contigs:
1
Largest Contig:
1,308,759 bp
Assembly Length:
1,308,759 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
11 days ago
Sample Metadata
BioSample entries
BioSample: SAMN02603690
Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Not detected
Other
Not detected
Package
Ncbi Submission Package:
Generic.1.0
Biosamplemodel:
Generic
All retrieved samples
SAMN02603690
: Sample from Candidatus Pelagibacter ubique HTCC1062
Metadata retrieved
11 days ago
© 2022-2025 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN02603690
×
Metadata retrieved using the EBI API
BioSample Accession(s)
SAMN02603690
strain
HTCC1062
type-material
reference material of Candidatus Pelagibacter ubique
NCBI submission package
Generic.1.0
organism
Candidatus Pelagibacter ubique HTCC1062
BioSampleModel
Generic
ENA-FIRST-PUBLIC
2014-01-30
ENA-LAST-UPDATE
2023-02-12
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