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Authors Ivanova

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Ivanova, Natalia


Publications
4

CitationNamesAbstract
Ecological and genomic analyses of candidate phylum <scp>WPS</scp>‐2 bacteria in an unvegetated soil Sheremet et al. (2020). Environmental Microbiology 22 (8) Ca. Rubrimentiphilum “Rubrimentiphilum” “Rubrimentiphilales”
Genomic Analysis of Caldithrix abyssi, the Thermophilic Anaerobic Bacterium of the Novel Bacterial Phylum Calditrichaeota Kublanov et al. (2017). Frontiers in Microbiology 8 Calditrichia Calditrichota
Genome Sequence of “Candidatus Frankia datiscae” Dg1, the Uncultured Microsymbiont from Nitrogen-Fixing Root Nodules of the Dicot Datisca glomerata Persson et al. (2011). Journal of Bacteriology 193 (24) Ca. Frankia datiscae
Metatranscriptomic array analysis of ‘Candidatus Accumulibacter phosphatis’-enriched enhanced biological phosphorus removal sludge He et al. (2010). Environmental Microbiology 12 (5) “Accumulibacter phosphatis”

Ecological and genomic analyses of candidate phylum <scp>WPS</scp>‐2 bacteria in an unvegetated soil
SummaryMembers of the bacterial candidate phylum WPS‐2 (or Eremiobacterota) are abundant in several dry, bare soil environments. In a bare soil deposited by an extinct iron–sulfur spring, we found that WPS‐2 comprised up to 24% of the bacterial community and up to 108 cells per g of soil based on 16S rRNA gene sequencing and quantification. A single genus‐level cluster (Ca. Rubrimentiphilum) predominated in bare soils but was less abundant in adjacent forest. Nearly complete genomes of Ca. Rubrimentiphilum were recovered as single amplified genomes (SAGs) and metagenome‐assembled genomes (MAGs). Surprisingly, given the abundance of WPS‐2 in bare soils, the genomes did not indicate any capacity for autotrophy, phototrophy, or trace gas metabolism. Instead, they suggest a predominantly aerobic organoheterotrophic lifestyle, perhaps based on scavenging amino acids, nucleotides, and complex oligopeptides, along with lithotrophic capacity on thiosulfate. Network analyses of the entire community showed that some species of Chloroflexi, Actinobacteria, and candidate phylum AD3 (or Dormibacterota) co‐occurred with Ca. Rubrimentiphilum and may represent ecological or metabolic partners. We propose that Ca. Rubrimentiphilum act as efficient heterotrophic scavengers. Combined with previous studies, these data suggest that the phylum WPS‐2 includes bacteria with diverse metabolic capabilities.
Genome Sequence of “Candidatus Frankia datiscae” Dg1, the Uncultured Microsymbiont from Nitrogen-Fixing Root Nodules of the Dicot Datisca glomerata
ABSTRACT Members of the noncultured clade of Frankia enter into root nodule symbioses with actinorhizal species from the orders Cucurbitales and Rosales. We report the genome sequence of a member of this clade originally from Pakistan but obtained from root nodules of the American plant Datisca glomerata without isolation in culture.
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