Strain sc|0017281


StrainInfo: SI-ID 354032 T

Taxon
Methanosarcina barkeriT
Sample
Anaerobic sewage digester
Cultures (7)
DSM 800 = JCM 10043 = ATCC 43569 = VKM B-1635 = NBRC 100474 = BCRC 16175 = CCRC 16175
Other Designations (2)
OCM 38 = VKM B-1635,strain MS
Sequences (10)
  • Gene Nucleotide:AY064401
    Methanosarcina barkeri strain MS (DSM 800) tRNA-Pyl (pylT) gene, complete sequence; PylS and PylB genes, complete cds; and PylC gene, partial cds
  • Gene Nucleotide:AB019139
    Methanosarcina barkeri gene for nitrogenase iron protein, partial cds
  • rRNA Operon Nucleotide:AJ012094
    Methanosarcina barkeri 16S rRNA gene, strain DSM 800 (T)
  • Gene Nucleotide:AF013713
    Methanosarcina barkeri methylcobamide:CoM methyltransferase isozyme A (mtbA), monomethylamine corrinoid protein (mtmC1), monomethylamine methyltransferase (mtmB1), putative monomethylamine permease (mtmP), and unknown genes, complete cds
  • rRNA Operon Nucleotide:JQ346756
    Methanosarcina barkeri culture DSM:800 16S ribosomal RNA gene, partial sequence
  • Gene Nucleotide:AF028006
    Methanosarcina barkeri atp operon: ATP synthase beta subunit (atpD), ATP synthase epsilon subunit (atpC), ATP synthase gene 1 (atpI), ATP synthase a subunit (atpB), ATP synthase c subunit (atpE), ATP synthase b subunit (atpF), ATP synthase alpha subunit (atpA), ATP synthase gamma subunit N-terminus homolog (atpG), and ATP synthase gamma subunit C-terminus homolog (atpJ) genes, complete cds
  • Gene Nucleotide:U36337
    Methanosarcina barkeri methylthiol:coenzyme M methyltransferase 40 kDa subunit (mtsA) and methylthiol:coenzyme M methyltransferase 30 kDa subunit (mtsB) genes, complete cds
  • rRNA Operon Nucleotide:AB973360
    Methanosarcina barkeri gene for 16S ribosomal RNA, partial sequence, strain: DSM 800.
  • rRNA Operon Nucleotide:E02704
    DNA sequence coding for main subunits of ATP synthetase derived from Methanosarcina barkeri.
  • Genome Assembly:GCA_001316305
    Methanosarcina barkeri JCM 10043
Associated Publications (8)
  • DOI: 10.1111/j.1432-1033.1989.tb14663.x
    Santos H, Fareleira P, Toci R, LeGall J, Peck HD Jr, Xavier AV (1989). In vivo 31P- and 13C-NMR studies of ATP synthesis and methane formation by Methanosarcina barkeri.
  • DOI: 10.1016/s0006-291x(86)80148-6
    Moura I, Lino AR, Moura JJ, Xavier AV, Fauque G, Peck HD Jr, LeGall J (1986). Low-spin sulfite reductases: a new homologous group of non-heme iron-siroheme proteins in anaerobic bacteria.
  • DOI: 10.1111/j.1432-1033.1984.tb08245.x
    Fauque G, Teixeira M, Moura I, Lespinat PA, Xavier AV, Der Vartanian DV, Peck HD Jr, Le Gall J, Moura JG (1984). Purification, characterization and redox properties of hydrogenase from Methanosarcina barkeri (DSM 800).
  • Hausinger RP, Moura I, Moura JJ, Xavier AV, Santos MH, LeGall J, Howard JB (1982). Amino acid sequence of a 3Fe:3S ferredoxin from the "archaebacterium" Methanosarcina barkeri (DSM 800).
  • DOI: 10.1006/bbrc.1997.7809
    Sumi M, Yohda M, Koga Y, Yoshida M (1997). F0F1-ATPase genes from an archaebacterium, Methanosarcina barkeri.
  • DOI: 10.1099/ijs.0.064956-0
    Ganzert L, Schirmack J, Alawi M, Mangelsdorf K, Sand W, Hillebrand-Voiculescu A, Wagner D (2014). Methanosarcina spelaei sp. nov., a methanogenic archaeon isolated from a floating biofilm of a subsurface sulphurous lake.
  • DOI: 10.1007/s00253-017-8457-4
    Lin Q, Fang X, Ho A, Li J, Yan X, Tu B, Li C, Li J, Yao M, Li X (2017). Different substrate regimes determine transcriptional profiles and gene co-expression in Methanosarcina barkeri (DSM 800).
  • DOI: 10.1016/j.watres.2023.119664
    Yi Y, Dolfing J, Jin G, Fang X, Han W, Liu L, Tang Y, Cheng L (2023). Thermodynamic restrictions determine ammonia tolerance of methanogenic pathways in Methanosarcina barkeri.
Outside links and data sources
Retrieved 17 days ago via StrainInfo API (CC BY 4.0)

Metadata

Cannonical URL
https://seqco.de/s:17281
Local history
  • Registered 7 months ago
  • Last modified 17 days ago
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