Strain sc|0019177

StrainInfo: SI-ID 45196 ^T

Taxon

Streptomyces scabiei

Sample

Potato scab (US)

Cultures (12)

ATCC 49173 = JCM 7914 = CIP 105438 = DSM 41658 = ICMP 12542 = KACC 20101 = KACC 20124 = NRRL B-16523 = CGMCC 4.1765 = LMG 20323 = CFBP 4517 = VTT E-011978

Other Designations (4)

MTCC 4733 = RL-34 = Lambert RL-34 = Bouchek K. SCAB8434

Sequences (31)

• Gene Nucleotide:EU864254
  Streptomyces scabiei strain ATCC 49173 thaxtomin synthetase B (txtB) gene, partial cds
• Gene Nucleotide:EU864244
  Streptomyces scabiei strain ATCC 49173 cytochrome P450 (txtC) gene, partial cds
• rRNA Operon Nucleotide:AB026199
  Streptomyces scabiei gene for 16S ribosomal RNA, 23S ribosomal RNA, complete and partial sequence, strain: ATCC 49173
• Gene Nucleotide:AF031232
  Streptomyces scabies transposase pseudogene, partial sequence; plant pathogenicity factor (nec1) gene, complete cds; and unknown gene
• Gene Nucleotide:EF101624
  Streptomyces scabiei strain ATCC 49173 RNA polymerase (rpoB) gene, partial cds
• rRNA Operon Nucleotide:AB041088
  Streptomyces scabiei gene for 16S rRNA, 16S-23S intergenic spacer, 23S rRNA, partial and complete sequence, isolate: ATCC 49173, clone:S1
• Gene Nucleotide:FJ007585
  Streptomyces scabiei strain ATCC 49173 cytochrome P450 monooxygenase (txtC) gene, partial cds
• Gene Nucleotide:EU864248
  Streptomyces scabiei strain ATCC 49173 transposase (tnp) pseudogene, partial sequence; and plant pathogenicity factor (nec1) gene, partial cds
• Gene Nucleotide:FJ007435
  Streptomyces scabiei strain ATCC 49173 RNA polymerase beta subunit (rpoB) gene, partial cds
• Gene Nucleotide:EU864252
  Streptomyces scabiei strain ATCC 49173 thaxtomin synthetase A (txtA) gene, partial cds
• rRNA Operon Nucleotide:D63862
  Streptomyces scabiei gene for 16S ribosomal RNA, complete sequence
• rRNA Operon Nucleotide:FJ007384
  Streptomyces scabiei strain ATCC 49173 16S ribosomal RNA gene, partial sequence
• Gene Nucleotide:FJ007485
  Streptomyces scabiei strain ATCC 49173 tomatinase (tomA) gene, partial cds
• Gene Nucleotide:AF109404
  Streptomyces scabiei insertion sequence IS1629 transposase (tnpA) gene, complete cds
• Gene Nucleotide:FJ007535
  Streptomyces scabiei strain ATCC 49173 thaxtomin synthetase A (txtA) gene, partial cds
• Gene Nucleotide:EU864246
  Streptomyces scabiei strain ATCC 49173 plant pathogenicity factor (nec1) gene, partial cds
• rRNA Operon Nucleotide:AF091226
  Streptomyces sp. ATCC 49173 16S ribosomal RNA gene, partial sequence
• Gene Nucleotide:EU864250
  Streptomyces scabiei strain ATCC 49173 transposase (tnp) pseudogene, partial sequence
• Gene Nucleotide:JF923429
  Streptomyces scabiei strain DSM 41658 ribonuclease P RNA (rnpB) gene, partial sequence
• rRNA Operon Nucleotide:AY296926
  Streptomyces scabiei strain DSM 41658 clone ITS5 16S-23S ribosomal RNA intergenic spacer, partial sequence
• rRNA Operon Nucleotide:AY296923
  Streptomyces scabiei strain DSM 41658 clone ITS15 16S-23S ribosomal RNA intergenic spacer, partial sequence
• rRNA Operon Nucleotide:AY296925
  Streptomyces scabiei strain DSM 41658 clone ITS4 16S-23S ribosomal RNA intergenic spacer, partial sequence
• rRNA Operon Nucleotide:AY296924
  Streptomyces scabiei strain DSM 41658 clone ITS2 16S-23S ribosomal RNA intergenic spacer, partial sequence
• rRNA Operon Nucleotide:AY296922
  Streptomyces scabiei strain DSM 41658 clone ITS1 16S-23S ribosomal RNA intergenic spacer, partial sequence
• rRNA Operon Nucleotide:AY296921
  Streptomyces scabiei strain DSM 41658 clone ITS 16S-23S ribosomal RNA intergenic spacer, partial sequence
• Gene Nucleotide:JQ838191
  Streptomyces scabiei strain NRRL B-16523 DNA gyrase B gene, partial cds
• Gene Nucleotide:HQ014934
  Streptomyces scabiei strain NRRL B-16523 tryptophan synthetase subunit B (trpB) gene, partial cds
• Gene Nucleotide:HQ014998
  Streptomyces scabiei strain NRRL B-16523 recombinase A (recA) gene, partial cds
• Gene Nucleotide:HQ015030
  Streptomyces scabiei strain NRRL B-16523 RNA polymerase subunit B (rpoB) gene, partial cds
• Gene Nucleotide:HQ014966
  Streptomyces scabiei strain NRRL B-16523 ATP synthetase beta subunit (atpD) gene, partial cds
• Genome Assembly:GCA_001005405
  Streptomyces scabiei NRRL B-16523

Associated Publications (6)

• DOI: 10.1111/j.1365-2672.2006.03146.x
  Cullen DW, Lees AK (2007). Detection of the nec1 virulence gene and its correlation with pathogenicity in Streptomyces species on potato tubers and in soil using conventional and real-time PCR.
• DOI: 10.1099/ijs.0.65525-0
  Dastager SG, Kim CJ, Lee JC, Agasar D, Park DJ, Li WJ (2008). Streptomyces deccanensis sp. nov., an alkaliphilic species isolated from soil.
• DOI: 10.1094/PDIS-03-14-0278-PDN
  Hiltunen LH, Kelloniemi J, Valkonen JPT (2014). First Report of Streptomyces europaeiscabiei Causing Common Scab on Potato in Finland.
• DOI: 10.1094/PDIS.1997.81.11.1317
  Lindholm P, Kortemaa H, Kokkola M, Haahtela K, Salkinoja-Salonen M, Valkonen JPT (1997). Streptomyces spp. Isolated from Potato Scab Lesions Under Nordic Conditions in Finland.
• DOI: 10.1039/c3ob40536b
  Kodani S, Bicz J, Song L, Deeth RJ, Ohnishi-Kameyama M, Yoshida M, Ochi K, Challis GL (2013). Structure and biosynthesis of scabichelin, a novel tris-hydroxamate siderophore produced by the plant pathogen Streptomyces scabies 87.22.
• DOI: 10.1099/ijsem.0.004556
  Mo P, Liu J, Zhao Y, Xu Z (2020). Streptomyces phaeolivaceus sp. nov. and Streptomyces broussonetiae sp. nov., isolated from the leaves and rhizosphere soil of Broussonetia papyrifera.

Outside links and data sources

• StrainInfo DOI: 10.60712/SI-ID45196.3

Retrieved 5 months ago via StrainInfo API (CC BY 4.0)

Metadata

Cannonical URL

https://seqco.de/s:19177

Local history

• Registered 11 months ago
• Last modified 5 months ago