Strain sc|0020697

StrainInfo: SI-ID 46629 ^T

Taxon

Nocardia abscessus

Sample

Joint abscess of a 56-year-old man with a complete endoprosthesis of one knee (DE)

Cultures (12)

ATCC 23824 = CIP 106822 = JCM 10984 = DSM 44432 = ATCC BAA-279 = JCM 6043 = CCUG 45938 = CCUG 46577 = CIP 107496 = AS 4.1723 = NBRC 100374 = CGMCC 4.1723

Other Designations (11)

399 = IMMIB D-1592 = IFM 10011 = CCUG45938 = CCUG46577 = IFM 10029 = HIK N-63 = B-1162 = IMMIB N-63 = IMMIB D-1599 = VA-12

Sequences (27)

• rRNA Operon Nucleotide:AY262328
  Nocardia asteroides clone A1 16S ribosomal RNA gene, partial sequence
• Gene Nucleotide:U89166
  Eikenella corrodens lysine decarboxylase (ECORLD) gene, complete cds
• rRNA Operon Nucleotide:X84851
  N.asteroides 16S rRNA gene (ATCC 23824)
• Gene Nucleotide:FJ502220
  Nocardia abscessus strain CGMCC 4.1723 FADH2-dependent halogenase (halo) gene, partial cds
• Gene Nucleotide:AY544983
  Nocardia abscessus strain DSM 44432 65 kDa heat shock protein (hsp65) gene, partial cds
• rRNA Operon Nucleotide:AY544980
  Nocardia abscessus strain DSM 44432 16S ribosomal RNA gene, partial sequence
• rRNA Operon Nucleotide:JN041489
  Nocardia abscessus NBRC 100374 strain DSM 44432 16S ribosomal RNA gene, partial sequence
• Gene Nucleotide:JN041726
  Nocardia abscessus NBRC 100374 strain DSM 44432 heat shock protein 65 (hsp65) gene, partial cds
• Gene Nucleotide:JN215593
  Nocardia abscessus NBRC 100374 strain DSM 44432 RNA polymerase beta subunit (rpoB) gene, partial cds
• Gene Nucleotide:JN041252
  Nocardia abscessus NBRC 100374 strain DSM 44432 DNA gyrase subunit B (gyrB) gene, partial cds
• Gene Nucleotide:JN041963
  Nocardia abscessus NBRC 100374 strain DSM 44432 SecA1 (secA1) gene, partial cds
• Gene Nucleotide:AY544982
  Nocardia abscessus RpoB (rpoB) gene, partial cds
• Gene Nucleotide:AY544981
  Nocardia abscessus superoxide dismutase (SOD) gene, partial cds
• Gene Nucleotide:GQ496132
  Nocardia abscessus culture-collection CDC<USA-GA>:W7476 DNA gyrase subunit B (gyrB) gene, partial cds
• rRNA Operon Nucleotide:GQ376194
  Nocardia abscessus NBRC 100374 16S ribosomal RNA gene, partial sequence
• Gene Nucleotide:DQ360260
  Nocardia abscessus strain ATCC BAA-279 SecA1 (secA1) gene, partial cds
• rRNA Operon Nucleotide:GU236319
  Nocardia abscessus strain ATCC BAA-279 clone 4 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence
• rRNA Operon Nucleotide:GU236316
  Nocardia abscessus strain ATCC BAA-279 clone 1 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence
• rRNA Operon Nucleotide:DQ659895
  Nocardia abscessus strain ATCC BAA-279 16S ribosomal RNA gene, partial sequence
• rRNA Operon Nucleotide:GU236318
  Nocardia abscessus strain ATCC BAA-279 clone 3 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence
• rRNA Operon Nucleotide:GU236320
  Nocardia abscessus strain ATCC BAA-279 clone 5 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence
• rRNA Operon Nucleotide:GU236317
  Nocardia abscessus strain ATCC BAA-279 clone 2 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence
• rRNA Operon Nucleotide:AF430018
  Nocardia abscessus strain JCM 6043 16S ribosomal RNA gene, complete sequence
• rRNA Operon Nucleotide:AF536391
  Nocardia abscessus strain JCM 6043 note copy 2 16S-23S ribosomal RNA intergenic spacer, complete sequence
• rRNA Operon Nucleotide:AF536390
  Nocardia abscessus strain JCM 6043 note copy 1 16S-23S ribosomal RNA intergenic spacer, complete sequence
• Genome Assembly:GCA_000308455
  Nocardia abscessus NBRC 100374
• rRNA Operon Nucleotide:EF204471
  Nocardia abscessus strain CGMCC 4.1723 16S-23S ribosomal RNA intergenic spacer, complete sequence

Associated Publications (4)

• DOI: 10.1099/00207713-50-4-1487
  Yassin AF, Mendrock U, Schaal KP, Brzezinka H, Rainey FA (2000). Nocardia abscessus sp. nov.
• DOI: 10.1099/00221287-56-3-265
  Tsukamura M (1969). Numerical Taxonomy of the Genus Nocardia
• DOI: 10.1128/JCM.41.2.851-856.2003
  Roth A, Andrees S, Harmsen D, Mauch H, Kroppenstedt RM (2003). Phylogeny of the genus Nocardia based on reassessed 16S rRNA gene sequences reveals underspeciation and division of strains classified as Nocardia asteroides into three established species and two unnamed taxons.
• DOI: 10.1016/S0167-7012(99)00055-X
  Nishiuchi Y, Baba T, Hotta HH, Yano I (1999). Mycolic acid analysis in Nocardia species. The mycolic acid compositions of Nocardia asteroides, N. farcinica, and N. nova.

Outside links and data sources

• StrainInfo DOI: 10.60712/SI-ID46629.2

Retrieved 13 days ago via StrainInfo API (CC BY 4.0)

Metadata

Cannonical URL

https://seqco.de/s:20697

Local history

• Registered 26 days ago
• Last modified 13 days ago