Strain sc|0024379

StrainInfo: SI-ID 40282

Taxon

Acidithiobacillus ferrooxidans (not Acidithiobacillus ferridurans)

Sample

Ore, uranium mine

Cultures (6)

ATCC 33020 = CECT 830 = CCRC 13823 = BCRC 13823 = JCM 18981 = DSM 29468

Other Designations (2)

Tsuchiya 11Fe = 11Fe

Sequences (44)

• Gene Nucleotide:AB362168
  Acidithiobacillus ferridurans cbbL2 gene for ribulose-1, 5-bisphosphate carboxylase/oxygenase large-subunit, partial cds, strain: ATCC 33020
• rRNA Operon Nucleotide:AJ278719
  Acidithiobacillus ferrooxidans 16S partial 16S rRNA gene, strain ATCC33020
• Gene Nucleotide:AJ318504
  Acidithiobacillus ferrooxidans partial petA1 gene for putative Rieske protein
• Gene Nucleotide:AJ318502
  Acidithiobacillus ferrooxidans partial sdrA1 gene for putative glucose/ribitol oxidoreductase
• Gene Nucleotide:AJ318500
  Acidithiobacillus ferrooxidans partial cycA2 gene for putative c4-type cytochrome
• Gene Nucleotide:AJ413194
  Acidithiobacillus ferrooxidans partial resB gene and partial resC gene
• Gene Nucleotide:M81087
  Acidithiobacillus ferridurans F1F0-ATPase c subunit (atpE), F1F0-ATPase b subunit (atpF), F1F0-ATPase delta subunit (atpH), F1F0-ATPase alpha subunit (atpA), F1F0-ATPase gamma-subunit (atpG), F1F0-ATPase beta subunit (atpD), and F1F0-ATPase epsilon subunit (atpC) genes, complete cds
• Gene Nucleotide:AJ006456
  Acidithiobacillus ferrooxidans cyc1, cyc2, coxA, coxB, coxC, coxD and rus genes and open reading frame
• Gene Nucleotide:AJ427631
  Acidithiobacillus ferrooxidans partial cycA2 gene for putative c4-type cytochrome
• Gene Nucleotide:AJ413193
  Acidithiobacillus ferrooxidans partial resB gene
• Gene Nucleotide:FN687426
  Acidithiobacillus ferrooxidans partial recA gene, strain ATCC33020
• rRNA Operon Nucleotide:FN686779
  Acidithiobacillus ferrooxidans partial 16S rRNA gene, strain ATCC33020
• Gene Nucleotide:AJ318503
  Acidithiobacillus ferrooxidans partial sdrA1 gene for putative glucose/ribitol oxidoreductase
• Gene Nucleotide:M58480
  Acidithiobacillus ferridurans hypothetical protein (ORF1) and nitrogen metabolism regulator (ntrA) genes, complete cds; and hypothetical protein (ORF3) gene, partial cds
• Gene Nucleotide:AM261983
  Acidithiobacillus ferrooxidans partial sdrA1 gene for hypothetical short chain dehydrogenase
• rRNA Operon Nucleotide:AB189136
  Acidithiobacillus ferridurans gene, 16S-23S rDNA region, strain: ATCC 33020
• Gene Nucleotide:AM261984
  Acidithiobacillus ferrooxidans partial cycA2 gene for hypothetical cytochrome c4
• Gene Nucleotide:AF032884
  Acidithiobacillus ferridurans strain ATCC 33020 N-acetylglucosamine-1-phosphate uridyltransferase (glmU) gene, partial cds; glucosamine synthase (glmS) gene, complete cds; transposon Tn5468 transposition complex (tnsA), tnsB (tnsB), tnsC (tnsC), tnsD (tnsD), and Tn5468 ORF genes, complete cds; RecG (recG) gene, complete cds; and unknown gene
• Gene Nucleotide:AJ311888
  Acidithiobacillus ferrooxidans partial sdrA2 gene for putative ribitol/glucose oxidoreductase
• Gene Nucleotide:X52699
  Acidithiobacillus ferrooxidans plasmid pTF1 mobilization genes mobL and mobS
• Gene Nucleotide:U81808
  Thiobacillus ferrooxidans pyruvate dehydrogenase complex E1 alpha subunit (pdhA), pyruvate dehydrogenase complex E1 beta subunit (pdhB), pyruvate dehydrogenase complex dihydrolipoyl transacetylase/lipoamide dehydrogenase (pdhC), putative citrate synthase (gltA) and putative gamma-glutamylcysteine synthetase (gshA) genes, complete cds
• Gene Nucleotide:AJ320262
  Acidithiobacillus ferrooxidans partial petC2 gene for putative cytochrome c1 and hip gene for putative high-redox potential iron-sulfur protein (HiPIP)
• Gene Nucleotide:AJ413196
  Acidithiobacillus ferrooxidans partial petB2 gene for putative cytochrome b and partial petC2 gene for putative cytochrome c1
• Gene Nucleotide:AJ318501
  Acidithiobacillus ferrooxidans partial petB2 gene for putative cytochrome b
• Gene Nucleotide:AJ318506
  Acidithiobacillus ferrooxidans partial petB1 gene for putative cytochrome b
• Gene Nucleotide:AM261985
  Acidithiobacillus ferrooxidans partial sdrA2 gene for hypothetical short chain dehydrogenase
• Gene Nucleotide:AJ318505
  Acidithiobacillus ferrooxidans partial petB1 gene for putative cytochrome b
• Gene Nucleotide:AJ438314
  Acidithiobacillus ferrooxidans partial cycA1 gene for putative c4-type cytochrome
• rRNA Operon Nucleotide:AJ278724
  Acidithiobacillus ferrooxidans 16S rRNA gene (partial), 23S rRNA gene and internal transcribed spacer 1 (ITS1), strain ATCC33020
• Gene Nucleotide:AJ311889
  Acidithiobacillus ferrooxidans partial petB2 gene for putative cytochrome b
• Gene Nucleotide:X95571
  Acidithiobacillus ferrooxidans alaS gene
• rRNA Operon Nucleotide:AF173880
  Acidithiobacillus ferridurans strain ATCC 33020 arsenate reductase (arsC), ArsR-like protein, arsenical membrane pump (arsB), ArsH-like protein, signal recognition particle protein-like protein, 30S ribosomal protein S16-like protein, and 16S ribosomal RNA processing protein RIMM-like protein genes, complete cds; and unknown genes
• Gene Nucleotide:FN689422
  Acidithiobacillus ferrooxidans partial atpD gene for ATP synthase subunit beta, strain ATCC 33020
• Gene Nucleotide:AJ413195
  Acidithiobacillus ferrooxidans partial petA2 gene for Rieske protein
• Gene Nucleotide:AJ413192
  Acidithiobacillus ferrooxidans partial petC1 gene for putative cytochrome c1
• Gene Nucleotide:FN688736
  Acidithiobacillus ferrooxidans partial nifH gene for iron-sulfur subunit of the nitrogenase reductase, strain ATCC33020
• Gene Nucleotide:U20361
  Thiobacillus ferrooxidans thioredoxin (trxA) gene, complete cds and rho transcription terminator (rho) gene, partial cds
• Gene Nucleotide:AJ413191
  Acidithiobacillus ferrooxidans partial petB1 gene for putative cytochrome b and partial petC1 gene for putative cytochrome c1
• Gene Nucleotide:AM261982
  Acidithiobacillus ferrooxidans partial cycA1 gene for cytochrome c4
• Gene Nucleotide:U36427
  Thiobacillus ferrooxidans glutamate synthase large subunit GltB (gltB) gene, partial cds, glutamate synthase small subunit gltD (gltD) gene, complete cds
• Gene Nucleotide:AB362167
  Acidithiobacillus ferridurans cbbL1 gene for ribulose-1, 5-bisphosphate carboxylase/oxygenase large-subunit, partial cds, strain: ATCC 33020
• Genome Assembly:GCA_018854555
  Acidithiobacillus ferridurans ATCC 33020
• rRNA Operon Nucleotide:MN746438
  Acidithiobacillus ferridurans strain ATCC 33020 16S ribosomal RNA gene, partial sequence
• Genome Assembly:GCA_003966655
  Acidithiobacillus ferridurans JCM 18981

Associated Publications (13)

• DOI: 10.1099/00221287-140-10-2543
  Kilkenny CA, Berger DK, Rawlings DE (1994). Isolation of the Thiobacillus ferrooxidans ntrBC genes using a T. ferrooxidans nifH-lacZ fusion.
• DOI: 10.1016/0378-1119(86)90132-0
  Pretorius IM, Rawlings DE, Woods DR (1986). Identification and cloning of Thiobacillus ferrooxidans structural nif genes in Escherichia coli.
• DOI: 10.1099/00221287-134-5-1141
  Ramesar RS, Woods DR, Rawlings DE (1988). Cloning and expression in Escherichia coli of a recA-like gene from the acidophilic autotroph Thiobacillus ferrooxidans.
• DOI: 10.1128/jb.157.1.324-326.1984
  Holmes DS, Lobos JH, Bopp LH, Welch GC (1984). Cloning of a Thiobacillus ferrooxidans plasmid in Escherichia coli.
• DOI: 10.1016/0378-1119(96)00282-x
  Deane SM, Rawlings DE (1996). Cloning and sequencing of the gene for the Thiobacillus ferrooxidans ATCC33020 glutamate synthase (GOGAT) small subunit and complementation of an Escherichia coli gltD mutant.
• DOI: 10.1099/00221287-143-10-3123
  Dominy CN, Deane SM, Rawlings DE (1997). A geographically widespread plasmid from Thiobacillus ferrooxidans has genes for ferredoxin-, FNR-, prismane- and NADH-oxidoreductase-like proteins which are also located on the chromosome.
• DOI: 10.1128/JB.180.11.3007-3012.1998
  Oppon JC, Sarnovsky RJ, Craig NL, Rawlings DE (1998). A Tn7-like transposon is present in the glmUS region of the obligately chemoautolithotrophic bacterium Thiobacillus ferrooxidans.
• DOI: 10.1006/plas.1998.1344
  Dominy CN, Coram NJ, Rawlings DE (1998). Sequence analysis of plasmid pTF5, a 19.8-kb geographically widespread member of the Thiobacillus ferrooxidans pTFI91-like plasmid family.
• DOI: 10.1111/j.1574-6968.1998.tb13224.x
  Appia-Ayme C, Bengrine A, Cavazza C, Giudici-Orticoni MT, Bruschi M, Chippaux M, Bonnefoy V (1998). Characterization and expression of the co-transcribed cyc1 and cyc2 genes encoding the cytochrome c4 (c552) and a high-molecular-mass cytochrome c from Thiobacillus ferrooxidans ATCC 33020.
• DOI: 10.1016/s0167-4781(98)00199-7
  Bengrine A, Guiliani N, Appia-Ayme C, Jedlicki E, Holmes DS, Chippaux M, Bonnefoy V (1998). Sequence and expression of the rusticyanin structural gene from Thiobacillus ferrooxidans ATCC33020 strain.
• DOI: 10.1128/AEM.65.11.4781-4787.1999
  Appia-Ayme C, Guiliani N, Ratouchniak J, Bonnefoy V (1999). Characterization of an operon encoding two c-type cytochromes, an aa(3)-type cytochrome oxidase, and rusticyanin in Thiobacillus ferrooxidans ATCC 33020.
• DOI: 10.1099/ijs.0.049759-0
  Hedrich S, Johnson DB (2013). Acidithiobacillus ferridurans sp. nov., an acidophilic iron-, sulfur- and hydrogen-metabolizing chemolithotrophic gammaproteobacterium.
• DOI: 10.1128/MRA.01028-18
  Miyauchi T, Kouzuma A, Abe T, Watanabe K (2018). Complete Genome Sequence of Acidithiobacillus ferridurans JCM 18981.

Outside links and data sources

• StrainInfo DOI: 10.60712/SI-ID40282.3

Retrieved 5 months ago via StrainInfo API (CC BY 4.0)

Metadata

Cannonical URL

https://seqco.de/s:24379

Local history

• Registered 11 months ago
• Last modified 5 months ago