Strain sc|0024594

StrainInfo: SI-ID 40524 ^T

Taxon

Haloferax mediterranei

Sample

Solar salt pond (ES)

Cultures (16)

ATCC 33500 = CCM 3361 = IFO 14739 = NCMB 2177 = DSM 1411 = JCM 8866 = NCIMB 2177 = VKM B-1748 = VKM B-1538 = NBRC 14739 = BCRC 15765 = CCRC 15765 = IAM 13647 = CGMCC 1.2087 = CGMCC 1.2143 = CGMCC 1.2630

Other Designations (3)

F. Rodriguez-Valera r-4 = Rodriguez-Valera F. r-4 = R-4

Sequences (23)

• Gene Nucleotide:AJ809514
  Haloferax mediterranei partial rpoB gene for RNA polymerase B subunit, strain ATCC 33500
• Genome Assembly:GCA_000685635
  Haloferax mediterranei ATCC 33500
• Gene Nucleotide:FM210539
  Haloferax mediterranei glnA gene for glutamine synthetase, strain ATCC 33500/R4
• Genome Assembly:GCA_000306765
  Haloferax mediterranei ATCC 33500 CGMCC 1.2087
• Gene Nucleotide:AJ564485
  Haloferax mediterranei partial idi gene for putative isopentenyl diphosphate isomerase type 1
• Gene Nucleotide:AJ564468
  Haloferax mediterranei partial mvd gene for putative diphosphomevalonate decarboxylase
• Gene Nucleotide:FM210538
  Haloferax mediterranei icd gene for isocitrate dehydrogenase, strain ATCC 33500/R4
• rRNA Operon Nucleotide:U82482
  Haloferax mediterranei 23S ribosomal RNA gene, complete sequence
• Gene Nucleotide:AF069527
  Haloferax mediterranei heat-shock protein-23 (grpE), (hmd47), putative glutamate dehydrogenase (gdhA), heat-shock protein-70 (dnaK), heat-shock protein-40 (dnaJ), and putative acetyl-CoA synthetase (acs-1) genes, complete cds
• Gene Nucleotide:D64073
  Haloferax mediterranei DNA for serine protease halolysin R4, complete cds
• Gene Nucleotide:AJ564491
  Haloferax mediterranei partial idi gene for isopentenyl diphosphate isomerase type 2
• rRNA Operon Nucleotide:D11107
  Haloferax mediterranei gene for 16S rRNA, strain: ATCC 33500
• Genome Assembly:GCA_005406325
  Haloferax mediterranei ATCC 33500
• Genome Assembly:GCA_033843025
  Haloferax mediterranei ATCC 33500
• Genome Assembly:GCA_000337295
  Haloferax mediterranei ATCC 33500
• Gene Nucleotide:X64701
  H.mediterranei genes gvpA, gvpC to gvpO
• Gene Nucleotide:AF196833
  Haloferax mediterranei cell division protein FtsZ (ftsZ) and protein translocase SecE (secE) genes, complete cds; transcription termination factor NusG (nusG) gene, partial cds; and unknown gene
• Gene Nucleotide:AB477167
  Haloferax mediterranei gene for RNA polymerase subunit B', complete cds, strain: JCM 8866
• rRNA Operon Nucleotide:AB663379
  Haloferax mediterranei gene for 16S rRNA, complete sequence, strain: JCM 8866
• rRNA Operon Nucleotide:L27161
  Halobacterium mediterranei 5S ribosomal RNA
• Gene Nucleotide:HM116245
  Haloferax mediterranei strain CGMCC 1.2087 beta-ketothiolase gene, complete cds
• Gene Nucleotide:JN980969
  Haloferax mediterranei strain CGMCC 1.2087 MaoC (maoC), GAP12 (gap12), and PhaP (phaP) genes, complete cds
• Gene Nucleotide:EU374220
  Haloferax mediterranei PhaP (phaP), PhaE (phaE), PhaC (phaC), and universal stress protein (usp) genes, complete cds

Associated Publications (12)

• DOI: 10.1016/s0008-6215(96)90134-2
  Parolis H, Parolis LA, Boan IF, Rodriguez-Valera F, Widmalm G, Manca MC, Jansson PE, Sutherland IW (1996). The structure of the exopolysaccharide produced by the halophilic Archaeon Haloferax mediterranei strain R4 (ATCC 33500).
• DOI: 10.1016/s0723-2020(00)80053-3
  Briones C, Amils R (2000). Nucleotide sequence of the 235 rRNA from Haloferax mediterranei and phylogenetic analysis of halophilic archaea based on LSU rRNA.
• DOI: 10.1016/j.biortech.2010.03.044
  Fang CJ, Ku KL, Lee MH, Su NW (2010). Influence of nutritive factors on C50 carotenoids production by Haloferax mediterranei ATCC 33500 with two-stage cultivation.
• DOI: 10.1016/j.resmic.2021.103919
  Serrano S, Mendo S, Caetano T (2021). Haloarchaea have a high genomic diversity for the biosynthesis of carotenoids of biotechnological interest.
• DOI: 10.3389/fmicb.2022.895296
  Llorca MG, Martinez-Espinosa RM (2022). Assessment of Haloferax mediterranei Genome in Search of Copper-Molecular Machinery With Potential Applications for Bioremediation.
• DOI: 10.1039/d2ra02581g
  Vaz BMC, Kholany M, Pinto DCGA, Macario IPE, Veloso T, Caetano T, Pereira JL, Coutinho JAP, Ventura SPM (2022). Recovery of bacterioruberin and proteins using aqueous solutions of surface-active compounds.
• DOI: 10.3390/biology12020236
  Costa T, Cassin E, Moreirinha C, Mendo S, Caetano TS (2023). Towards the Understanding of the Function of Lanthipeptide and TOMM-Related Genes in Haloferax mediterranei.
• DOI: 10.1128/aem.02284-23
  Chen S, Dai Y, Ke J, Luo Y, Wang C, Hao Y, Zhang A, Han J, Xiang H (2024). Halocin H4 is activated through cleavage by halolysin HlyR4.
• DOI: 10.3389/fmicb.2022.1000962
  Montemurro M, Salvatori G, Alfano S, Martinelli A, Verni M, Pontonio E, Villano M, Rizzello CG (2022). Exploitation of wasted bread as substrate for polyhydroxyalkanoates production through the use of Haloferax mediterranei and seawater.
• DOI: 10.1128/JB.00134-08
  Lu Q, Han J, Zhou L, Zhou J, Xiang H (2008). Genetic and biochemical characterization of the poly(3-hydroxybutyrate-co-3-hydroxyvalerate) synthase in Haloferax mediterranei.
• DOI: 10.1186/1746-1448-6-9
  Han J, Li M, Hou J, Wu L, Zhou J, Xiang H (2010). Comparison of four phaC genes from Haloferax mediterranei and their function in different PHBV copolymer biosyntheses in Haloarcula hispanica.
• DOI: 10.1128/JB.00880-12
  Han J, Zhang F, Hou J, Liu X, Li M, Liu H, Cai L, Zhang B, Chen Y, Zhou J, Hu S, Xiang H (2012). Complete genome sequence of the metabolically versatile halophilic archaeon Haloferax mediterranei, a poly(3-hydroxybutyrate-co-3-hydroxyvalerate) producer.

Outside links and data sources

• StrainInfo DOI: 10.60712/SI-ID40524.3

Retrieved 5 months ago via StrainInfo API (CC BY 4.0)

Metadata

Cannonical URL

https://seqco.de/s:24594

Local history

• Registered 11 months ago
• Last modified 5 months ago