Strain sc|0024955

StrainInfo: SI-ID 41768 ^T

Taxon

Pectobacterium wasabiae (not Erwinia carotovora subsp. wasabiae)

Sample

Isolated from Eutrema wasabi (Sieb.) Maxim.,Eutrema wasabi Maxim.,rhizome,fibrous roots (JP)

Cultures (13)

ATCC 43316 = ICMP 9121 = PDDCC 921 = CIP 105194 = CFBP 3304 = PDDCC 9121 = LMG 8404 = NCPPB 3701 = IMI 356525 = LMG 8444 = KACC 10061 = DSM 18074 = LMG 9034

Other Designations (3)

SR 91 = Goto S91 = SR91

Sequences (38)

• Gene Nucleotide:AY209017
  Pectobacterium carotovorum subsp. wasabiae DNA gyrase A subunit (gyrA) gene, partial cds
• Gene Nucleotide:FJ895855
  Pectobacterium wasabiae strain ATCC 43316 glyceraldehyde-3-phosphate dehydrogenase (gapA) gene, partial cds
• Gene Nucleotide:FJ895856
  Pectobacterium wasabiae strain ATCC 43316 isocitrate dehydrogenase (icdA) gene, partial cds
• Gene Nucleotide:FJ895859
  Pectobacterium wasabiae strain ATCC 43316 gamma-glutamylphosphate reductase (proA) gene, partial cds
• Gene Nucleotide:FJ895857
  Pectobacterium wasabiae strain ATCC 43316 malate dehydrogenase (mdh) gene, partial cds
• rRNA Operon Nucleotide:AF232679
  Pectobacterium carotovorum subsp. wasabiae strain ATCC 43316 16S-23S intergenic spacer region and tRNA-Glu gene, complete sequence
• Gene Nucleotide:FJ895858
  Pectobacterium wasabiae strain ATCC 43316 glucose-6-phosphate isomerase (pgi) gene, partial cds
• Gene Nucleotide:AF234277
  Pectobacterium carotovorum subsp. wasabiae tRNA-Ile and tRNA-Ala genes, complete sequence
• Gene Nucleotide:FJ895854
  Pectobacterium wasabiae strain ATCC 43316 aconitate hydrase 1 (acnA) gene, partial cds
• rRNA Operon Nucleotide:EF530558
  Pectobacterium wasabiae strain ICMP 9121 16S ribosomal RNA gene, partial sequence
• rRNA Operon Nucleotide:AJ223408
  Pectobacterium carotovorum subsp. wasabiae, strain ICMP 9121-T 16S rRNA gene
• Gene Nucleotide:DQ859798
  Pectobacterium wasabiae strain ICMP 9121 ATP synthase beta subunit (atpD) gene, partial cds
• Gene Nucleotide:GQ144391
  Pectobacterium wasabiae strain ICMP 9121 aconitase (acnA) gene, partial cds
• Gene Nucleotide:GQ144371
  Pectobacterium wasabiae strain ICMP 9121 malate dehydrogenase (mdh) gene, partial cds
• Gene Nucleotide:DQ859819
  Pectobacterium wasabiae strain ICMP 9121 carbamoylphosphate synthetase small subunit (carA) gene, partial cds
• Gene Nucleotide:DQ859863
  Pectobacterium wasabiae strain ICMP 9121 recombinase A (recA) gene, partial cds
• Gene Nucleotide:JN600341
  Pectobacterium wasabiae CFBP 3304 isocitrate dehydrogenase (icdA) gene, partial cds
• Gene Nucleotide:EU010052
  Pectobacterium wasabiae strain CFBP 3304 leucine tRNA synthetase (leuS) gene, partial cds
• rRNA Operon Nucleotide:JN600330
  Pectobacterium wasabiae CFBP 3304 16S ribosomal RNA gene, partial sequence
• Gene Nucleotide:AY217086
  Pectobacterium carotovorum subsp. wasabiae recombinase A (recA) gene, partial cds
• Gene Nucleotide:JN600344
  Pectobacterium wasabiae CFBP 3304 malate dehydrogenase (mdh) gene, partial cds
• rRNA Operon Nucleotide:JN600331
  Pectobacterium wasabiae CFBP 3304 16S ribosomal RNA gene, partial sequence
• Gene Nucleotide:EU010106
  Pectobacterium wasabiae strain CFBP 3304 RNA polymerase beta subunit (rpoB) gene, partial cds
• Gene Nucleotide:JN600355
  Pectobacterium wasabiae CFBP 3304 RNA polymerase subunit sigma 38 (rpoS) gene, partial cds
• Gene Nucleotide:EU010079
  Pectobacterium wasabiae strain CFBP 3304 CTP synthetase (pyrG) gene, partial cds
• Gene Nucleotide:JN600349
  Pectobacterium wasabiae CFBP 3304 glucose-6-phosphate isomerase (pgi) gene, partial cds
• Gene Nucleotide:EU010025
  Pectobacterium wasabiae strain CFBP 3304 elongation factor EF-G (fusA) gene, partial cds
• Gene Nucleotide:JN600338
  Pectobacterium wasabiae CFBP 3304 glyceraldehyde-3-phosphate dehydrogenase A (gabA) gene, partial cds
• Gene Nucleotide:JN600335
  Pectobacterium wasabiae CFBP 3304 aconitate hydrase 1 (acnA) gene, partial cds
• Gene Nucleotide:JN600352
  Pectobacterium wasabiae CFBP 3304 gamma-glutamylphosphate reductase (proA) gene, partial cds
• rRNA Operon Nucleotide:U80199
  Pectobacterium wasabiae CFBP 3304 16S ribosomal RNA gene, partial sequence
• Genome Assembly:GCA_001742185
  Pectobacterium wasabiae CFBP 3304
• Genome Assembly:GCA_000291725
  Pectobacterium wasabiae CFBP 3304
• Genome Assembly:GCA_000749865
  Pectobacterium wasabiae NCPPB 3701
• Gene Nucleotide:JF311721
  Pectobacterium wasabiae strain LMG 8444 initiation translation factor 2 (infB) gene, partial cds
• Gene Nucleotide:JF311495
  Pectobacterium wasabiae strain LMG 8444 ATP synthase beta subunit (atpD) gene, partial cds
• Gene Nucleotide:JF311608
  Pectobacterium wasabiae strain LMG 8444 DNA gyrase (gyrB) gene, partial cds
• Gene Nucleotide:JF311833
  Pectobacterium wasabiae strain LMG 8444 RNA polymerase beta subunit (rpoB) gene, partial cds

Associated Publications (4)

• DOI: 10.1099/ijs.0.02423-0
  Gardan L, Gouy C, Christen R, Samson R (2003). Elevation of three subspecies of Pectobacterium carotovorum to species level: Pectobacterium atrosepticum sp. nov., Pectobacterium betavasculorum sp. nov. and Pectobacterium wasabiae sp. nov.
• DOI: 10.1007/s10709-014-9793-2
  Khayi S, Raoul des Essarts Y, Quetu-Laurent A, Moumni M, Helias V, Faure D (2014). Genomic overview of the phytopathogen Pectobacterium wasabiae strain RNS 08.42.1A suggests horizontal acquisition of quorum-sensing genes.
• DOI: 10.1099/ijsem.0.001524
  Khayi S, Cigna J, Chong TM, Quetu-Laurent A, Chan KG, Helias V, Faure D (2016). Transfer of the potato plant isolates of Pectobacterium wasabiae to Pectobacterium parmentieri sp. nov.
• DOI: 10.1099/ijsem.0.003029
  Sarfraz S, Riaz K, Oulghazi S, Cigna J, Sahi ST, Khan SH, Faure D (2018). Pectobacterium punjabense sp. nov., isolated from blackleg symptoms of potato plants in Pakistan.

Outside links and data sources

• StrainInfo DOI: 10.60712/SI-ID41768.3

Retrieved 5 months ago via StrainInfo API (CC BY 4.0)

Metadata

Cannonical URL

https://seqco.de/s:24955

Local history

• Registered 11 months ago
• Last modified 5 months ago