Strain sc|0025993

StrainInfo: SI-ID 447 ^T

Taxon

Agrobacterium rubi (not Rhizobium rubi)

Sample

Black raspberry (US)

Cultures (24)

LMG 156 = ATCC 13335 = CIP 104332 = IAM 13569 = ICMP 6428 = LMG 17935 = NCPPB 1854 = PDDCC 6428 = DSM 6772 = IFO 13261 = CECT 4118 = CCRC 12820 = KCTC 2434 = ICMP 11833 = NBRC 13261 = CFBP 1317 = HAMBI 1812 = BCRC 12820 = KCTC 12454 = KACC 10739 = JCM 20918 = CGMCC 1.2558 = CFBP 5509 = CFBP 6448

Other Designations (12)

LMG 17935 QC 3/03 = NZRCC 10203 = LMG156T QC 10/03 = Starr TR 3 = DSMZ 6772 = LMG 17935 QC 6/97 = TR 3 = Keane 44 = ICPB TR3 = ?Hildebrand "boysenberry 1" = TR3 = LMG 13935

Sequences (35)

• rRNA Operon Nucleotide:AF208483
  Agrobacterium rubi 23S ribosomal RNA gene, partial sequence
• rRNA Operon Nucleotide:X67228
  Agrobacterium rubi partial 16S rRNA gene, strain LMG 156
• Gene Nucleotide:AY752738
  Agrobacterium rubi strain ATCC 13335 DnaK gene, complete cds
• Gene Nucleotide:JX064266
  Agrobacterium rubi TruA (truA) gene, partial cds
• Gene Nucleotide:JX064338
  Agrobacterium rubi ThrA (thrA) gene, partial cds
• rRNA Operon Nucleotide:AY244376
  Agrobacterium rubi strain IAM 13569 23S ribosomal RNA gene, partial sequence
• Gene Nucleotide:JX064194
  Agrobacterium rubi hypothetical protein (SMc00019) gene, partial cds
• rRNA Operon Nucleotide:D12787
  Agrobacterium rubi gene for 16S rRNA, strain: IAM 13569
• Gene Nucleotide:AM295394
  Agrobacterium rubi partial rpoB gene for RNA polymerase beta subunit, strain LMG 17935
• Gene Nucleotide:FM213293
  Agrobacterium rubi partial hrcA gene for heat-inducible transcription repressor, type strain LMG 17935T
• Gene Nucleotide:FM213147
  Agrobacterium rubi partial rpoD gene for RNA polymerase sigma factor, type strain LMG 17935T
• Gene Nucleotide:AM181613
  Agrobacterium rubi partial gltA gene for citrate synthase, strain LMG 17935
• Gene Nucleotide:AM418834
  Agrobacterium rubi partial gyrB gene for DNA gyrase subunit beta, strain LMG 17935
• Gene Nucleotide:FM213245
  Agrobacterium rubi partial ribonuclease P RNA (rnpB gene), type strain LMG 17935T
• Gene Nucleotide:AM295440
  Agrobacterium rubi partial gap gene for glyceraldehyde 3-phosphate dehydrogenase, strain LMG 17935
• Gene Nucleotide:AM181687
  Agrobacterium rubi partial thrC gene for threonine synthase, strain LMG 17935
• Gene Nucleotide:AM182078
  Agrobacterium rubi partial dnaK gene for molecular chaperone Hsp70, stain LMG 17935
• Gene Nucleotide:EU812069
  Agrobacterium rubi strain LMG 17935 FusA (fusA) gene, partial cds
• Gene Nucleotide:AM418787
  Agrobacterium rubi partial atpD gene for ATP synthase beta subunit, strain LMG 17935
• Gene Nucleotide:EF217310
  Agrobacterium rubi strain LMG 17935 RNA polymerase beta chain (rpoB) gene, partial cds
• Gene Nucleotide:AM182936
  Agrobacterium rubi partial glnA gene for glutamine synthase, strain LMG 17935
• Gene Nucleotide:AM295444
  Agrobacterium rubi partial pnp gene for polyribonucleotide nucleotidyltransferase, strain LMG 17935
• Gene Nucleotide:FM213197
  Agrobacterium rubi partial pal gene for peptidoglycan-associated lipoprotein, type strain LMG 17935T
• Gene Nucleotide:AM182122
  Agrobacterium rubi partial recA gene for recombinase A, strain LMG 17935
• rRNA Operon Nucleotide:AM181759
  Agrobacterium rubi partial 16S rRNA gene, strain LMG 17935
• rRNA Operon Nucleotide:AF345276
  Rhizobium rubi strain DSM 6772 clone 1 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA, partial sequence
• rRNA Operon Nucleotide:AF345277
  Rhizobium rubi strain DSM 6772 clone 2 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA, partial sequence
• Genome Assembly:GCA_017873055
  Agrobacterium rubi DSM 6772
• rRNA Operon Nucleotide:D14503
  Agrobacterium rubi gene for 16S ribosomal RNA, complete sequence
• rRNA Operon Nucleotide:AY626395
  Agrobacterium rubi strain ICMP 11833 16S ribosomal RNA gene, partial sequence
• rRNA Operon Nucleotide:AB680385
  Agrobacterium rubi gene for 16S rRNA, partial sequence, strain: NBRC 13261
• Genome Assembly:GCA_000739935
  Agrobacterium rubi TR3 = NBRC 13261
• Gene Nucleotide:KF206814
  Agrobacterium rubi strain HAMBI 1812 recombinase A (recA) gene, partial cds
• Gene Nucleotide:KF206562
  Agrobacterium rubi strain HAMBI 1812 ATP synthase F1 beta subunit (atpD) gene, partial cds
• Gene Nucleotide:KF206905
  Agrobacterium rubi strain HAMBI 1812 RNA polymerase beta subunit (rpoB) gene, partial cds

Associated Publications (4)

• DOI: 10.1099/ijs.0.032532-0
  Pulawska J, Willems A, Sobiczewski P (2011). Rhizobium skierniewicense sp. nov., isolated from tumours on chrysanthemum and cherry plum.
• DOI: 10.1021/bm061081f
  De Castro C, Gargiulo V, Lanzetta R, Parrilli M (2007). Agrobacterium rubi(T) DSM 6772 produces a lipophilic polysaccharide capsule whose degree of acetylation is growth modulated.
• DOI: 10.1094/PDIS-94-8-1064C
  Alippi AM, Lopez AC, Balatti PA (2010). First Report of Agrobacterium rubi and A. rhizogenes Causing Crown and Root Gall and Hairy Root on Blueberry in Argentina.
• DOI: 10.1016/j.syapm.2018.01.003
  Zahradnik J, Nunvar J, Parizkova H, Kolarova L, Palyzova A, Maresova H, Grulich M, Kyslikova E, Kyslik P (2018). Agrobacterium bohemicum sp. nov. isolated from poppy seed wastes in central Bohemia.

Outside links and data sources

• StrainInfo DOI: 10.60712/SI-ID447.3

Retrieved 5 months ago via StrainInfo API (CC BY 4.0)

Metadata

Cannonical URL

https://seqco.de/s:25993

Local history

• Registered 11 months ago
• Last modified 5 months ago