Strain sc|0027959

StrainInfo: SI-ID 92568 ^T

Taxon

Flavobacterium psychrophilum (not Cytophaga psychrophila)

Sample

Coho salmon, kidney (US)

Cultures (13)

LMG 13179 = ATCC 49418 = CIP 103534 = DSM 3660 = NCIMB 1947 = NCMB 1947 = CCUG 35200 = IAM 14308 = JCM 8519 = CCM 3594 = IFO 15942 = NBRC 15942 = NBRC 100250

Other Designations (5)

strain 3068 = LNPAA PO1/88 = LMG13179T QC 7/04 = DSM 3660: LMG 13179 = 3068

Sequences (14)

• Gene Nucleotide:FR774027
  Flavobacterium psychrophilum partial gyrB gene, strain LMG 13179
• rRNA Operon Nucleotide:AY662493
  Flavobacterium psychrophilum strain ATCC 49418 16S ribosomal RNA gene, partial sequence
• rRNA Operon Nucleotide:AY757361
  Flavobacterium psychrophilum strain ATCC 49418 16S-23S intergenic spacer, partial sequence
• rRNA Operon Nucleotide:AY577822
  Flavobacterium psychrophilum strain ATCC 49418 16S ribosomal RNA gene, partial sequence
• Genome Assembly:GCA_900101925
  Flavobacterium psychrophilum DSM 3660 = ATCC 49418
• Genome Assembly:GCA_002217405
  Flavobacterium psychrophilum DSM 3660 = ATCC 49418
• Gene Nucleotide:JX657167
  Flavobacterium psychrophilum strain DSM 3660 DNA-directed RNA polymerase subunit beta' (rpoC) gene, partial cds
• rRNA Operon Nucleotide:JX657045
  Flavobacterium psychrophilum strain DSM 3660 16S ribosomal RNA gene, partial sequence
• rRNA Operon Nucleotide:D12670
  Flavobacterium psychrophilum gene for 16S ribosomal RNA, partial sequence
• rRNA Operon Nucleotide:AB297494
  Flavobacterium psychrophilum gene for 16S ribosomal RNA, partial sequence.
• rRNA Operon Nucleotide:HM443879
  Flavobacterium psychrophilum strain NCIMB 1947 16S ribosomal RNA gene, partial sequence.
• rRNA Operon Nucleotide:AY034478
  Flavobacterium psychrophilum 16S ribosomal RNA gene, partial sequence
• rRNA Operon Nucleotide:AB078060
  Flavobacterium psychrophilum gene for 16S rRNA, strain:IFO 15942
• rRNA Operon Nucleotide:AB681149
  Flavobacterium psychrophilum gene for 16S rRNA, partial sequence, strain: NBRC 100250

Associated Publications (8)

• DOI: 10.3354/dao065209
  Soule M, LaFrentz S, Cain K, LaPatra S, Call DR (2005). Polymorphisms in 16S rRNA genes of Flavobacterium psychrophilum correlate with elastin hydrolysis and tetracycline resistance.
• DOI: 10.3354/dao074037
  Sudheesh PS, LaFrentz BR, Call DR, Siems WF, LaPatra SE, Wiens GD, Cain KD (2007). Identification of potential vaccine target antigens by immunoproteomic analysis of a virulent and a non-virulent strain of the fish pathogen Flavobacterium psychrophilum.
• DOI: 10.1186/1944-3277-10-3
  Wu AK, Kropinski AM, Lumsden JS, Dixon B, MacInnes JI (2015). Complete genome sequence of the fish pathogen Flavobacterium psychrophilum ATCC 49418(T.).
• DOI: 10.1111/j.1365-2761.2007.00809.x
  Arai H, Morita Y, Izumi S, Katagiri T, Kimura H (2007). Molecular typing by pulsed-field gel electrophoresis of Flavobacterium psychrophilum isolates derived from Japanese fish.
• DOI: 10.1111/j.1365-2761.2011.01250.x
  Sundell K, Wiklund T (2011). Effect of biofilm formation on antimicrobial tolerance of Flavobacterium psychrophilum.
• DOI: 10.1038/s41598-021-87167-1
  Takeuchi M, Fujiwara-Nagata E, Katayama T, Suetake H (2021). Skin bacteria of rainbow trout antagonistic to the fish pathogen Flavobacterium psychrophilum.
• DOI: 10.3389/fcimb.2017.00076
  Levipan HA, Avendano-Herrera R (2017). Different Phenotypes of Mature Biofilm in Flavobacterium psychrophilum Share a Potential for Virulence That Differs from Planktonic State.
• DOI: 10.3389/fmicb.2018.00018
  Levipan HA, Quezada J, Avendano-Herrera R (2018). Stress Tolerance-Related Genetic Traits of Fish Pathogen Flavobacterium psychrophilum in a Mature Biofilm.

Outside links and data sources

• StrainInfo DOI: 10.60712/SI-ID92568.3

Retrieved 5 months ago via StrainInfo API (CC BY 4.0)

Metadata

Cannonical URL

https://seqco.de/s:27959

Local history

• Registered 12 months ago
• Last modified 5 months ago