Strain sc|0028400

StrainInfo: SI-ID 39549 ^T

Taxon

Yersinia ruckeri

Sample

Rainbow trout with red mouth disease (US)

Cultures (17)

ATCC 29473 = NCIMB 2194 = CCUG 14190 = CCM 6093 = JCM 2429 = NCMB 2194 = NCTC 12986 = CECT 4319 = CCRC 14125 = LMG21879 = LMG 21870 = BCRC 14125 = HAMBI 1298 = KCTC 12265 = DSM 18506 = JCM 15110 = CIP 82.80

Other Designations (6)

CCTM La 3277 = CNCTC Y 64/90 = BWF H1 = CDC 2396-61 = CUETM 80109 = 2396-61

Sequences (29)

• rRNA Operon Nucleotide:AF366385
  Yersinia ruckeri 16S ribosomal RNA gene, partial sequence
• Gene Nucleotide:FJ518766
  Yersinia ruckeri ATCC 29473 recombination protein A (recA) gene, partial cds
• Gene Nucleotide:EF114077
  Yersinia ruckeri strain ATCC 29473 elongation factor Tu B (tufB) gene, partial cds
• Gene Nucleotide:EF114028
  Yersinia ruckeri strain ATCC 29473 elongation factor Tu A (tufA) gene, partial cds
• Gene Nucleotide:FJ717348
  Yersinia ruckeri strain ATCC 29473 glutamine synthetase (glnA) gene, partial cds
• rRNA Operon Nucleotide:X75275
  Yersinia ruckeri (ATCC 29473) partial 16S ribosomal RNA gene
• Gene Nucleotide:AF525881
  Yersinia ruckeri beta-lactamase (ampC) gene, partial cds
• Gene Nucleotide:FJ717365
  Yersinia ruckeri strain ATCC 29473 DNA gyrase subunit B (gyrB) gene, partial cds
• Gene Nucleotide:FJ518742
  Yersinia ruckeri ATCC 29473 DNA gyrase subunit B (gyrB) gene, partial cds
• Gene Nucleotide:AY370875
  Yersinia ruckeri strain ATCC 29473 gyrase B (gyrB) gene, partial cds
• Gene Nucleotide:FJ518754
  Yersinia ruckeri ATCC 29473 60 kDa heat shock protein (hsp60) gene, partial cds
• rRNA Operon Nucleotide:FJ518718
  Yersinia ruckeri strain ATCC 29473 16S ribosomal RNA gene, partial sequence
• Gene Nucleotide:FJ518730
  Yersinia ruckeri ATCC 29473 glutamine synthetase (glnA) gene, partial cds
• rRNA Operon Nucleotide:FJ518778
  Yersinia ruckeri ATCC 29473 16S ribosomal RNA gene, partial sequence
• Gene Nucleotide:FJ717382
  Yersinia ruckeri strain ATCC 29473 recombination protein A (recA) gene, partial cds
• Gene Nucleotide:FJ717374
  Yersinia ruckeri strain ATCC 29473 Hsp60 (hsp60) gene, partial cds
• Genome Assembly:GCA_000754815
  Yersinia ruckeri ATCC 29473
• Genome Assembly:GCA_000173755
  Yersinia ruckeri ATCC 29473
• rRNA Operon Nucleotide:FJ518716
  Yersinia ruckeri ATCC 29473 16S ribosomal RNA gene, partial sequence.
• rRNA Operon Nucleotide:FJ518717
  Yersinia ruckeri ATCC 29473 16S ribosomal RNA gene, partial sequence.
• rRNA Operon Nucleotide:FJ518776
  Yersinia ruckeri ATCC 29473 16S ribosomal RNA gene, partial sequence.
• rRNA Operon Nucleotide:FJ518777
  Yersinia ruckeri ATCC 29473 16S ribosomal RNA gene, partial sequence.
• Gene Nucleotide:EF175598
  Yersinia ruckeri strain CCUG 14190 RpoB (rpoB) gene, partial cds
• Gene Nucleotide:EF173176
  Yersinia ruckeri strain CCUG 14190 Hsp60 (hsp60) gene, partial cds
• Gene Nucleotide:EF175589
  Yersinia ruckeri strain CCUG 14190 GyrB (gyrB) gene, partial cds
• rRNA Operon Nucleotide:EF179132
  Yersinia ruckeri strain CCUG 14190 16S ribosomal RNA gene, partial sequence
• Genome Assembly:GCA_900460715
  Yersinia ruckeri NCTC12986
• rRNA Operon Nucleotide:LT899970
  Yersinia ruckeri partial 16S rRNA gene, strain HAMBI 1298
• rRNA Operon Nucleotide:KJ606914
  Yersinia ruckeri strain DSM 18506 16S ribosomal RNA gene, partial sequence.

Associated Publications (6)

• DOI: 10.1002/mbo3.460
  Cascales D, Guijarro JA, Garcia-Torrico AI, Mendez J (2017). Comparative genome analysis reveals important genetic differences among serotype O1 and serotype O2 strains of Y. ruckeri and provides insights into host adaptation and virulence.
• DOI: 10.1186/s12917-018-1408-1
  Menanteau-Ledouble S, Lawrence ML, El-Matbouli M (2018). Invasion and replication of Yersinia ruckeri in fish cell cultures.
• DOI: 10.3389/fcimb.2018.00373
  Wrobel A, Ottoni C, Leo JC, Linke D (2018). pYR4 From a Norwegian Isolate of Yersinia ruckeri Is a Putative Virulence Plasmid Encoding Both a Type IV Pilus and a Type IV Secretion System.
• DOI: 10.1093/nar/gkab1115
  Andreopoulos WB, Geller AM, Lucke M, Balewski J, Clum A, Ivanova NN, Levy A (2022). Deeplasmid: deep learning accurately separates plasmids from bacterial chromosomes.
• DOI: 10.1016/j.fsi.2021.10.021
  Cingelova Maruscakova I, Schusterova P, Popelka P, Gancarcikova S, Csank T, Feckaninova A, Ratvaj M, Mudronova D (2021). Effect of autochthonous lactobacilli on immunologically important molecules of rainbow trout after bacterial infection studied on intestinal primoculture.
• Huang Y, Ryll M, Walker C, Jung A, Runge M, Steinhagen D (2014). Fatty acid composition of Yersinia ruckeri isolates from aquaculture ponds in northwestern Germany.

Outside links and data sources

• StrainInfo DOI: 10.60712/SI-ID39549.3

Retrieved 28 days ago via StrainInfo API (CC BY 4.0)

Metadata

Cannonical URL

https://seqco.de/s:28400

Local history

• Registered over 1 year ago
• Last modified 28 days ago