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Strain sc|0029612

Name

Clostridioides difficileT

Strain numbers

ATCC 9689 = BCRC 10642 = CCRC 10642 = CCUG 4938 = CGMCC 1.2184 = CIP 104282 = DSM 1296 = JCM 1296 = LMG 15861 = NCIB 10666 = NCIMB 10666 = NCTC 11209
This strain is associated as type material for multiple names:

StrainInfo: SI-ID 377146 T

Taxon
Clostridioides difficileT
Cultures (18)
LMG 15861 = ATCC 9689 = CCRC 10642 = CCUG 4938 = DSM 1296 = JCM 1296 = NCIMB 10666 = NCTC 11209 = CIP 104282 = NCIB 10666 = CECT 531 = KCTC 3264 = KCTC 5009 = LMG 21717 = BCRC 10642 = VTT E-001746 = VTT E-011964 = AS 1.2184
Other Designations (13)
DSMZ 1296 = LMG21717T QC 6/04 = Carlier 10008 = CCTM La 3397 = E-001746 = L.S. McClung 1780 = LMG21717T QC oorspr = McClung 1780 = 90556-M6S = 1780 = USDA 90556-M6S = 10008 = Clark 90556-M6S
Sequences (25)
Associated Publications (32)
  • DOI: 10.1128/iai.25.1.191-201.1979
    Rolfe RD, Finegold SM (1979). Purification and characterization of Clostridium difficile toxin.
  • DOI: 10.1128/AAC.35.6.1108
    Swanson RN, Hardy DJ, Shipkowitz NL, Hanson CW, Ramer NC, Fernandes PB, Clement JJ (1991). In vitro and in vivo evaluation of tiacumicins B and C against Clostridium difficile.
  • DOI: 10.1080/003655400459540
    Oppenheimer M, Kronvall G, Karlsson I, Holst E (2000). Fusidic acid disk diffusion testing of clostridium difficile can be calibrated using single-strain regression analysis.
  • DOI: 10.1016/j.anaerobe.2006.03.004
    Trejo FM, Minnaard J, Perez PF, De Antoni GL (2006). Inhibition of Clostridium difficile growth and adhesion to enterocytes by Bifidobacterium supernatants.
  • DOI: 10.1128/IAI.00051-11
    Miura M, Kato H, Matsushita O (2011). Identification of a novel virulence factor in Clostridium difficile that modulates toxin sensitivity of cultured epithelial cells.
  • DOI: 10.1371/journal.pone.0056545
    Lei XH, Bochner BR (2013). Using phenotype microarrays to determine culture conditions that induce or repress toxin production by Clostridium difficile and other microorganisms.
  • DOI: 10.1186/1471-2334-14-29
    Garneau JR, Valiquette L, Fortier LC (2014). Prevention of Clostridium difficile spore formation by sub-inhibitory concentrations of tigecycline and piperacillin/tazobactam.
  • DOI: 10.1186/1472-6882-14-329
    Hammond EN, Donkor ES, Brown CA (2014). Biofilm formation of Clostridium difficile and susceptibility to Manuka honey.
  • DOI: 10.1007/s00508-014-0682-6
    Steindl G, Fiedler A, Huhulescu S, Wewalka G, Allerberger F (2014). Effect of airborne hydrogen peroxide on spores of Clostridium difficile.
  • DOI: 10.1155/2016/1462405
    Rodriguez-Palacios A, Ilic S, LeJeune JT (2016). Subboiling Moist Heat Favors the Selection of Enteric Pathogen Clostridium difficile PCR Ribotype 078 Spores in Food.
  • DOI: 10.1016/j.micpath.2017.03.002
    Zarandi ER, Mansouri S, Nakhaee N, Sarafzadeh F, Moradi M (2017). Toxin production of Clostridium difficile in sub-MIC of vancomycin and clindamycin alone and in combination with ceftazidime.
  • DOI: 10.3389/fmicb.2018.02953
    Yang J, Yang H (2018). Effect of Bifidobacterium breve in Combination With Different Antibiotics on Clostridium difficile.
  • DOI: 10.3389/fcimb.2019.00288
    Yang J, Yang H (2019). Antibacterial Activity of Bifidobacterium breve Against Clostridioides difficile.
  • DOI: 10.1007/s10096-020-03857-0
    Wultanska D, Piotrowski M, Pituch H (2020). The effect of berberine chloride and/or its combination with vancomycin on the growth, biofilm formation, and motility of Clostridioides difficile.
  • Moradi M, Mansouri S, Nakhaee N, Sarafzadeh F, Zarandi ER (2020). Toxin A and B genes expression of Clostridium difficile in the sub-minimum inhibitory concentration of clindamycin, vancomycin and in combination with ceftazidime.
  • DOI: 10.3389/fmicb.2020.01863
    Yang J, Yang H (2020). Transcriptome Analysis of the Clostridioides difficile Response to Different Doses of Bifidobacterium breve.
  • DOI: 10.3390/pathogens10080927
    Vigsnaes LK, Ghyselinck J, Van den Abbeele P, McConnell B, Moens F, Marzorati M, Bajic D (2021). 2'FL and LNnT Exert Antipathogenic Effects against C. difficile ATCC 9689 In Vitro, Coinciding with Increased Levels of Bifidobacteriaceae and/or Secondary Bile Acids.
  • DOI: 10.1016/j.anaerobe.2022.102545
    Chaudhry R, Sharma N, Bahadur T, Khullar S, Agarwal SK, Gahlowt A, Gupta N, Kumar L, Kabra SK, Dey AB (2022). Molecular characterization of Clostridioides difficile by multi-locus sequence typing (MLST): A study from tertiary care center in India.
  • DOI: 10.3390/molecules27217385
    Wultanska D, Paterczyk B, Nowakowska J, Pituch H (2022). The Effect of Selected Bee Products on Adhesion and Biofilm of Clostridioides difficile Strains Belonging to Different Ribotypes.
  • DOI: 10.3389/fnut.2019.00184
    Fehlbaum S, Chassard C, Schwab C, Voolaid M, Fourmestraux C, Derrien M, Lacroix C (2019). In vitro Study of Lactobacillus paracasei CNCM I-1518 in Healthy and Clostridioides difficile Colonized Elderly Gut Microbiota.
  • DOI: 10.1128/JB.00321-13
    Aboulnaga el-H, Pinkenburg O, Schiffels J, El-Refai A, Buckel W, Selmer T (2013). Effect of an oxygen-tolerant bifurcating butyryl coenzyme A dehydrogenase/electron-transferring flavoprotein complex from Clostridium difficile on butyrate production in Escherichia coli.
  • DOI: 10.1128/genomeA.01186-15
    Riedel T, Bunk B, Wittmann J, Thurmer A, Sproer C, Gronow S, Liesegang H, Daniel R, Overmann J (2015). Complete Genome Sequence of the Clostridium difficile Type Strain DSM 1296T.
  • DOI: 10.3402/mehd.v26.27988
    Forssten SD, Roytio H, Hibberd AA, Ouwehand AC (2015). The effect of polydextrose and probiotic lactobacilli in a Clostridium difficile-infected human colonic model.
  • DOI: 10.1186/s12917-024-03975-3
    Jang HJ, Kim JA, Kim Y (2024). Characterization of feline-originated probiotics Lactobacillus rhamnosus CACC612 and Bifidobacterium animalis subsp. lactis CACC789 and and evaluation of their host response.
  • DOI: 10.1016/j.jhin.2016.03.018
    Wesgate R, Rauwel G, Criquelion J, Maillard JY (2016). Impact of standard test protocols on sporicidal efficacy.
  • DOI: 10.1017/ice.2018.255
    Tarrant J, Jenkins RO, Laird KT (2018). From ward to washer: The survival of Clostridium difficile spores on hospital bed sheets through a commercial UK NHS healthcare laundry process.
  • DOI: 10.1099/jmm.0.080796-0
    Novakova J, Dzunkova M, Musilova S, Vlkova E, Kokoska L, Moya A, D'Auria G (2014). Selective growth-inhibitory effect of 8-hydroxyquinoline towards Clostridium difficile and Bifidobacterium longum subsp. longum in co-culture analysed by flow cytometry.
  • DOI: 10.1016/j.jphotobiol.2015.09.003
    Choi S, Lee H, Yu J, Chae H (2015). In vitro augmented photodynamic bactericidal activity of tetracycline and chitosan against Clostridium difficile KCTC5009 in the planktonic cultures.
  • DOI: 10.3390/pathogens9040279
    Choi SS, Oh HY, Kim EJ, Lee HK, Kim HK, Choi HH, Kim SW, Chae HS (2020). In Vitro Bactericidal Effects of Photodynamic Therapy Combined with Four Tetracyclines against Clostridioides difficile KCTC5009 in Planktonic Cultures.
  • DOI: 10.3389/fmicb.2016.00577
    Valdes-Varela L, Alonso-Guervos M, Garcia-Suarez O, Gueimonde M, Ruas-Madiedo P (2016). Screening of Bifidobacteria and Lactobacilli Able to Antagonize the Cytotoxic Effect of Clostridium difficile upon Intestinal Epithelial HT29 Monolayer.
  • DOI: 10.3389/fmicb.2016.00738
    Valdes-Varela L, Hernandez-Barranco AM, Ruas-Madiedo P, Gueimonde M (2016). Effect of Bifidobacterium upon Clostridium difficile Growth and Toxicity When Co-cultured in Different Prebiotic Substrates.
  • DOI: 10.1016/j.mimet.2015.09.022
    Valdes L, Gueimonde M, Ruas-Madiedo P (2015). Monitoring in real time the cytotoxic effect of Clostridium difficile upon the intestinal epithelial cell line HT29.
Outside links and data sources
Retrieved 5 months ago via StrainInfo API (CC BY 4.0)

StrainInfo: SI-ID 9651 T

Taxon
Bifidobacterium longum subsp. suis (not Clostridioides difficileT)
Sample
Pig, faeces
Cultures (13)
LMG 11598 = DSM 20211 = CIP 103377 = JCM 1269 = CCRC 14671 = LMG21814 = HAMBI 1381 = NRRL B-41407 = CGMCC 1.2184 = ATCC 27533 = BCRC 14671 = CCUG 35234 = VTT E-021921
Other Designations (7)
LMG 21814T QC om = LMG 21814T QC 1/03 = SU859 = SU 859 = KCTC 3229 = Scardovi SU859 = CUETM 89/42
Sequences (14)
Associated Publications (2)
  • DOI: 10.1128/aem.00410-22
    Li B, Chen D, Lin F, Wu C, Cao L, Chen H, Hu Y, Yin Y (2022). Genomic Island-Mediated Horizontal Transfer of the Erythromycin Resistance Gene erm(X) among Bifidobacteria.
  • DOI: 10.1099/ijs.0.000162
    Modesto M, Michelini S, Stefanini I, Sandri C, Spiezio C, Pisi A, Filippini G, Biavati B, Mattarelli P (2015). Bifidobacterium lemurum sp. nov., from faeces of the ring-tailed lemur (Lemur catta).
Outside links and data sources
Retrieved 5 months ago via StrainInfo API (CC BY 4.0)

Metadata

Cannonical URL
https://seqco.de/s:29612
Local history
  • Registered 11 months ago
  • Last modified 5 months ago
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