Strain sc|0031137

StrainInfo: SI-ID 311029 ^T

Taxon

Agrobacterium radiobacter (not Rhizobium radiobacter)

Sample

Ditch water (NL)

Cultures (25)

LMG 140 = ATCC 19358 = CCUG 3354 = DSM 30147 = IAM 12048 = ICMP 5785 = IFO 13532 = NCIB 9042 = NCPPB 3001 = PDDCC 5785 = CIP 104325 = NCIMB 9042 = LMD 27.5 = CECT 4112 = CCRC 10372 = CFBP 2414 = NCCB 27005 = NBRC 13532 = HAMBI 1814 = BCRC 10372 = KACC 10798 = CGMCC 1.2557 = CFBP 5522 = JCM 20371 = KCTC 22091

Other Designations (14)

ORS 1351 = Delft EX.3.24.2 = FIRDI 372 = Delft L624 = Fred 64 = NZRCC 10201 = LMD Ex3-24-2 = L.624 = DSMZ 30147 = CCTM La 3711 = L.624 E.X.3.24.2 = EX 3.24.2 = NZRM 3000 = Delft-3-24-2

Sequences (46)

• Gene Nucleotide:AM418832
  Agrobacterium radiobacter partial gyrB gene for DNA gyrase subunit beta, strain LMG 140
• rRNA Operon Nucleotide:AF541973
  Agrobacterium tumefaciens strain LMG 140 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence and 23S ribosomal RNA gene, partial sequence
• Gene Nucleotide:AM181612
  Agrobacterium radiobacter partial gltA gene for citrate synthase, strain LMG 140
• Gene Nucleotide:JN580718
  Agrobacterium radiobacter strain LMG 140 glutamine synthetase II (glnII) gene, partial cds
• Gene Nucleotide:AM182935
  Agrobacterium radiobacter partial glnA gene for glutamine synthase, strain LMG 140
• Gene Nucleotide:AM295393
  Agrobacterium radiobacter partial rpoB gene for RNA polymerase beta subunit, strain LMG 140
• Gene Nucleotide:AM295443
  Agrobacterium radiobacter partial pnp gene for polyribonucleotide nucleotidyltransferase, strain LMG 140
• Gene Nucleotide:AM418785
  Agrobacterium radiobacter partial atpD gene for ATP synthase beta subunit, strain LMG 140
• Gene Nucleotide:FM213195
  Agrobacterium tumefaciens partial pal gene for peptidoglycan-associated lipoprotein, type strain LMG 140T
• rRNA Operon Nucleotide:AM181758
  Agrobacterium radiobacter partial 16S rRNA gene, strain LMG 140
• Gene Nucleotide:AM295438
  Agrobacterium radiobacter partial gap gene for glyceraldehyde 3-phosphate dehydrogenase, strain LMG 140
• Gene Nucleotide:FM213145
  Agrobacterium tumefaciens partial rpoD gene for RNA polymerase sigma factor, type strain LMG 140T
• Gene Nucleotide:AM181686
  Agrobacterium radiobacter partial thrC gene for threonine synthase, strain LMG 140
• Gene Nucleotide:FM213291
  Agrobacterium tumefaciens partial hrcA gene for heat-inducible transcription repressor, type strain LMG 140T
• Gene Nucleotide:AM418721
  Agrobacterium radiobacter partial 23S rRNA gene, strain LMG 140
• Gene Nucleotide:AM182077
  Agrobacterium radiobacter partial dnaK gene for molecular chaperone Hsp70, stain LMG 140
• Gene Nucleotide:FM213243
  Agrobacterium tumefaciens partial ribonuclease P RNA (rnpB gene), type strain LMG 140T
• Gene Nucleotide:AM182121
  Agrobacterium radiobacter partial recA gene for recombinase A, strain LMG 140
• Gene Nucleotide:FM164311
  Agrobacterium tumefaciens partial recA gene for recombinase A, genomovar G4, strain ATCC 19358, allele recA-G4-2
• Genome Assembly:GCA_002008215
  Agrobacterium radiobacter LMG 140
• Gene Nucleotide:KC293536
  Agrobacterium tumefaciens strain ATCC 19358 RNA polymerase subunit alpha (rpoA) gene, partial cds
• Gene Nucleotide:FR695144
  Agrobacterium tumefaciens partial glgC gene for glucose-1-phosphate adenylyltransferase, allele glgC-G4-4, genomovar G4, strain ATCC 19358
• Gene Nucleotide:FR695243
  Agrobacterium tumefaciens partial gyrB gene for DNA gyrase subunit B, allele gyrB-G4-2, genomovar G4, strain ATCC 19358
• Gene Nucleotide:EU007408
  Agrobacterium tumefaciens strain ATCC 19358 ChvA (chvA) gene, partial cds
• Gene Nucleotide:FR695094
  Agrobacterium tumefaciens partial ampC gene for beta-lactamase, allele ampC-G4-3, genomovar G4, strain ATCC 19358
• Gene Nucleotide:FR695194
  Agrobacterium tumefaciens partial gltD gene for glutamate synthase small subunit, allele gltD-G4-2, genomovar G4, strain ATCC 19358
• Gene Nucleotide:FR695293
  Agrobacterium tumefaciens partial mutS gene for methyl-directed mismatch repair protein, allele mutS-G4-4, genomovar G4, strain ATCC 19358
• rRNA Operon Nucleotide:AJ389904
  Agrobacterium radiobacter 16S rRNA gene, strain ATCC19358
• rRNA Operon Nucleotide:MK424303
  Agrobacterium radiobacter strain ATCC 19358 (T) 16S ribosomal RNA gene, partial sequence
• rRNA Operon Nucleotide:MT534520
  Agrobacterium radiobacter strain ATCC 19358, type 16S ribosomal RNA gene, partial sequence
• Genome Assembly:GCA_008801385
  Agrobacterium tumefaciens CCUG 3354
• Gene Nucleotide:GU559881
  Agrobacterium tumefaciens strain DSM 30147 ATP synthase beta subunit gene, partial cds
• Gene Nucleotide:GU559876
  Agrobacterium tumefaciens strain DSM 30147 recombinase A gene, partial cds
• Gene Nucleotide:AY572468
  Agrobacterium tumefaciens strain DSM 30147 ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (cbbL) gene, partial cds
• Genome Assembly:GCA_963360635
  Agrobacterium radiobacter DSM 30147
• Genome Assembly:GCA_000421945
  Agrobacterium radiobacter DSM 30147
• rRNA Operon Nucleotide:AB247615
  Agrobacterium tumefaciens genes for 16S rRNA, tRNA-Ile, tRNA-Ala, 23S rRNA 150-b fragment, IVS, 23S rRNA 1.3-kb fragment A, partial and complete sequence, strain: IAM 12048
• rRNA Operon Nucleotide:OQ629322
  Agrobacterium tumefaciens strain IAM 12048 16S ribosomal RNA gene, partial sequence.
• Genome Assembly:GCA_011684005
  Agrobacterium radiobacter NCIB 9042
• Genome Assembly:GCA_001541305
  Agrobacterium radiobacter NCPPB 3001
• rRNA Operon Nucleotide:AB680423
  Agrobacterium tumefaciens gene for 16S rRNA, partial sequence, strain: NBRC 13532
• Gene Nucleotide:KF206649
  Agrobacterium tumefaciens strain HAMBI 1814 glutamine synthetase type I (glnA) gene, partial cds
• Gene Nucleotide:KF206734
  Agrobacterium tumefaciens strain HAMBI 1814 glutamine synthetase type II (glnII) gene, partial cds
• Gene Nucleotide:KF206563
  Agrobacterium tumefaciens strain HAMBI 1814 ATP synthase F1 beta subunit (atpD) gene, partial cds
• Gene Nucleotide:KF206906
  Agrobacterium tumefaciens strain HAMBI 1814 RNA polymerase beta subunit (rpoB) gene, partial cds
• Gene Nucleotide:KF206818
  Agrobacterium tumefaciens strain HAMBI 1814 recombinase A (recA) gene, partial cds

Associated Publications (14)

• DOI: 10.1099/ijs.0.022228-0
  Zhang GX, Ren SZ, Xu MY, Zeng GQ, Luo HD, Chen JL, Tan ZY, Sun GP (2010). Rhizobium borbori sp. nov., aniline-degrading bacteria isolated from activated sludge.
• DOI: 10.1016/j.syapm.2012.03.001
  Pulawska J, Willems A, De Meyer SE, Sule S (2012). Rhizobium nepotum sp. nov. isolated from tumors on different plant species.
• DOI: 10.1007/s00203-017-1367-0
  Yan J, Li Y, Han XZ, Chen WF, Zou WX, Xie Z, Li M (2017). Agrobacterium deltaense sp. nov., an endophytic bacteria isolated from nodule of Sesbania cannabina.
• DOI: 10.1099/ijsem.0.001885
  Yan J, Li Y, Yan H, Chen WF, Zhang X, Wang ET, Han XZ, Xie ZH (2017). Agrobacterium salinitolerans sp. nov., a saline-alkaline-tolerant bacterium isolated from root nodule of Sesbania cannabina.
• DOI: 10.3390/microorganisms8040608
  Zhao J, Zhao X, Wang J, Gong Q, Zhang X, Zhang G (2020). Isolation, Identification and Characterization of Endophytic Bacterium Rhizobium oryzihabitans sp. nov., from Rice Root with Biotechnological Potential in Agriculture.
• DOI: 10.1099/ijs.0.017491-0
  Kaur J, Verma M, Lal R (2010). Rhizobium rosettiformans sp. nov., isolated from a hexachlorocyclohexane dump site, and reclassification of Blastobacter aggregatus Hirsch and Muller 1986 as Rhizobium aggregatum comb. nov.
• DOI: 10.1099/ijsem.0.004443
  Velazquez E, Flores-Felix JD, Sanchez-Juanes F, Igual JM, Peix A (2020). Strain ATCC 4720(T) is the authentic type strain of Agrobacterium tumefaciens, which is not a later heterotypic synonym of Agrobacterium radiobacter.
• DOI: 10.1016/j.ijbiomac.2020.10.087
  Gao H, Yang L, Tian J, Huang L, Huang D, Zhang W, Xie F, Niu Y, Jin M, Jia C, Zou C, Huang J, Chang Z, Yang X, Jiang D (2020). Characterization and rheological properties analysis of the succinoglycan produced by a high-yield mutant of Rhizobium radiobacter ATCC 19358.
• DOI: 10.4056/sigs.4688352
  Zhang L, Li X, Zhang F, Wang G (2014). Genomic analysis of Agrobacterium radiobacter DSM 30147(T) and emended description of A. radiobacter (Beijerinck and van Delden 1902) Conn 1942 (Approved Lists 1980) emend. Sawada et al. 1993.
• DOI: 10.1016/j.jbiosc.2024.06.004
  Chang TS, Wu JY, Ding HY, Lin HY, Wang TY (2024). Exploring gingerol glucosides with enhanced anti-inflammatory activity through a newly identified alpha-glucosidase (ArG) from Agrobacterium radiobacter DSM 30147.
• DOI: 10.1007/s00203-004-0668-2
  Yoshida T, Hayakawa Y, Matsui T, Nagasawa T (2004). Purification and characterization of 2,6-dihydroxybenzoate decarboxylase reversibly catalyzing nonoxidative decarboxylation.
• DOI: 10.1099/ijs.0.028407-0
  Panday D, Schumann P, Das SK (2010). Rhizobium pusense sp. nov., isolated from the rhizosphere of chickpea (Cicer arietinum L.).
• DOI: 10.7717/peerj.6366
  Gan HM, Lee MVL, Savka MA (2019). Improved genome of Agrobacterium radiobacter type strain provides new taxonomic insight into Agrobacterium genomospecies 4.
• DOI: 10.1007/s10482-006-9100-z
  Humphry DR, Andrews M, Santos SR, James EK, Vinogradova LV, Perin L, Reis VM, Cummings SP (2007). Phylogenetic assignment and mechanism of action of a crop growth promoting Rhizobium radiobacter strain used as a biofertiliser on graminaceous crops in Russia.

Outside links and data sources

• StrainInfo DOI: 10.60712/SI-ID311029.3

Retrieved 5 months ago via StrainInfo API (CC BY 4.0)

Metadata

Cannonical URL

https://seqco.de/s:31137

Local history

• Registered 11 months ago
• Last modified 5 months ago