Strain sc|0031511

StrainInfo: SI-ID 40833 ^T

Taxon

Clostridium scindens

Sample

Human feces (US)

Cultures (7)

ATCC 35704 = DSM 5676 = JCM 6567 = CCRC 14551 = CCUG 45363 = CIP 106687 = BCRC 14551

Other Designations (2)

Bokkenheuser 19 = VPI 13733

Sequences (12)

• rRNA Operon Nucleotide:AF262238
  Clostridium scindens 16S ribosomal RNA gene, partial sequence
• Gene Nucleotide:AY691240
  Clostridium scindens strain ATCC 35704 60 kDa chaperonin (cpn60) gene, partial cds
• Genome Assembly:GCA_004295125
  [Clostridium] scindens ATCC 35704
• Genome Assembly:GCA_000154505
  [Clostridium] scindens ATCC 35704
• Gene Nucleotide:JF720847
  Clostridium scindens strain DSM5676 FeFe-hydrogenase group A4 (hyd) gene, partial cds
• Gene Nucleotide:JF720848
  Clostridium scindens strain DSM5676 FeFe-hydrogenase group A7 (hyd) gene, partial cds
• Gene Nucleotide:JF720849
  Clostridium scindens strain DSM5676 FeFe-hydrogenase group B1 (hyd) gene, partial cds
• rRNA Operon Nucleotide:Y18186
  Clostridium scindens 16S rRNA gene, partial, strain DSM 5676
• Gene Nucleotide:JF720846
  Clostridium scindens strain DSM5676 FeFe-hydrogenase group A1 (hyd) gene, partial cds
• rRNA Operon Nucleotide:AM040754
  Moellerella wisconsensis 16S rRNA gene, type strain DSM 5676T
• rRNA Operon Nucleotide:AB910747
  Clostridium scindens gene for 16S ribosomal RNA, partial sequence
• rRNA Operon Nucleotide:AB020883
  Clostridium scindens 16S rRNA, partial sequence, strain:JCM 6567

Associated Publications (9)

• DOI: 10.1021/acs.jafc.6b03347
  He W, Jiang B, Mu W, Zhang T (2016). Production of d-Allulose with d-Psicose 3-Epimerase Expressed and Displayed on the Surface of Bacillus subtilis Spores.
• DOI: 10.1371/journal.pone.0062987
  Zhang W, Fang D, Xing Q, Zhou L, Jiang B, Mu W (2013). Characterization of a novel metal-dependent D-psicose 3-epimerase from Clostridium scindens 35704.
• DOI: 10.1016/j.bbalip.2017.12.001
  Harris SC, Devendran S, Alves JMP, Mythen SM, Hylemon PB, Ridlon JM (2017). Identification of a gene encoding a flavoprotein involved in bile acid metabolism by the human gut bacterium Clostridium scindens ATCC 35704.
• DOI: 10.1194/jlr.M083949
  Devendran S, Mythen SM, Ridlon JM (2018). The desA and desB genes from Clostridium scindens ATCC 35704 encode steroid-17,20-desmolase.
• DOI: 10.1128/AEM.00052-19
  Devendran S, Shrestha R, Alves JMP, Wolf PG, Ly L, Hernandez AG, Mendez-Garcia C, Inboden A, Wiley J, Paul O, Allen A, Springer E, Wright CL, Fields CJ, Daniel SL, Ridlon JM (2019). Clostridium scindens ATCC 35704: Integration of Nutritional Requirements, the Complete Genome Sequence, and Global Transcriptional Responses to Bile Acids.
• DOI: 10.1128/JB.00039-20
  Reed AD, Nethery MA, Stewart A, Barrangou R, Theriot CM (2020). Strain-Dependent Inhibition of Clostridioides difficile by Commensal Clostridia Carrying the Bile Acid-Inducible (bai) Operon.
• DOI: 10.1099/ijsem.0.004673
  Rasmussen TS, Streidl T, Hitch TCA, Wortmann E, Deptula P, Kofoed MVW, Riedel T, Neumann-Schaal M, Hansen M, Nielsen DS, Clavel T, Vogensen FK (2021). Sporofaciens musculi gen. nov., sp. nov., a novel bacterium isolated from the caecum of an obese mouse.
• DOI: 10.1016/j.bbrc.2023.149440
  Guo Y, Shen K, Zhang X, Huang H (2023). In vitro characterization of alternative l-threonate and d-erythronate catabolic pathways.
• DOI: 10.1080/19490976.2024.2323233
  Meibom KL, Marion S, Volet C, Nass T, Vico-Oton E, Menin L, Bernier-Latmani R (2024). BaiJ and BaiB are key enzymes in the chenodeoxycholic acid 7alpha-dehydroxylation pathway in the gut microbe Clostridium scindens ATCC 35704.

Outside links and data sources

• StrainInfo DOI: 10.60712/SI-ID40833.3

Retrieved 5 months ago via StrainInfo API (CC BY 4.0)

Metadata

Cannonical URL

https://seqco.de/s:31511

Local history

• Registered 11 months ago
• Last modified 5 months ago