Strain sc|0032059

StrainInfo: SI-ID 92366 ^T

Taxon

Paracoccus denitrificans^T

Sample

Garden soil enriched with 5% K-Na-tartrate + 2% KNO3 (NL)

Cultures (29)

LMG 4218 = ATCC 17741 = DSM 65 = IAM 12479 = IMET 10380 = NCIB 11627 = NRRL B-3784 = ATCC 13543 = CIP 106306 = CCUG 30145 = NCIMB 11627 = JCM 6892 = CIP 105417 = CIP106400 = CCM 2922 = VKM B-1324 = LMD 22.21 = KCTC 2528 = KCTC 2530 = IFO 16712 = NBRC 16712 = LMG4128 = NCCB 22021 = IAM 15021 = CDBB 912 = JCM 21484 = NBRC 102528 = JCM 20620 = DSM 413

Other Designations (19)

449 = Stanier 381 = 381 = LMG 4218T QC 7/98 = Delft E.IV.8.8.1 = Stanier R.Y. 381 = Delft L450 = F. Pichinoty Md 1 = NRC 449 = EIV.8.1.1 = LMG 4218T QC 8/90 = E-IV 3.1.1 = R.Y. Stanier 381 = NCCB 22021,strain Stanier 381 = ICPB 3979 = Delft = ATCC 19367 = NCIB 8944 = CCM 982

Sequences (25)

• rRNA Operon Nucleotide:X69159
  P.denitrificans 16S rRNA
• rRNA Operon Nucleotide:Y16936
  Paracoccus pantotrophus 16S rRNA gene, strain LMG 4218
• Gene Nucleotide:X87287
  P.denitrificans 23S rRNA gene
• rRNA Operon Nucleotide:JF508203
  Paracoccus denitrificans strain ATCC 17741 clone ControlB11 16S ribosomal RNA gene, partial sequence
• rRNA Operon Nucleotide:Y16927
  Paracoccus denitrificans 16S rRNA gene, strain ATCC 17741T
• rRNA Operon Nucleotide:JF508186
  Paracoccus denitrificans strain ATCC 17741 clone ControlA04 16S ribosomal RNA gene, partial sequence
• Gene Nucleotide:HM060299
  Paracoccus denitrificans strain ATCC 17741 putative nitrite reductase (nirK) gene, partial cds
• Gene Nucleotide:AY498614
  Paracoccus pantotrophus strain DSM65 putative ABC transporter periplasmic binding protein (tauA) gene, partial cds; putative ABC transporter ATP binding protein (tauB), putative ABC transporter permease component (tauC), putative taurine dehydrogenase small subunit (tauX), putative taurine dehydrogenase large subunit (tauY), sulfoacetaldehyde acetyltransferase (xsc), and hypothetical membrane protein (tauZ) genes, complete cds; and phosphate acetyltransferase (pta) gene, partial cds
• Gene Nucleotide:AY177682
  Paracoccus pantotrophus insertion sequence ISPpa4 putative transposase gene, complete cds
• Gene Nucleotide:AJ440508
  Paracoccus pantotrophus partial nosZ gene for nitrous oxide reductase
• Gene Nucleotide:AF397210
  Paracoccus pantotrophus plasmid pHG16-a RepB (repB) gene, partial cds; and RepC (repC) gene, complete cds
• rRNA Operon Nucleotide:Y16935
  Paracoccus pantotrophus 16S rRNA gene, strain DSM 65
• rRNA Operon Nucleotide:D13480
  Paracoccus denitrificans 16S rRNA
• rRNA Operon Nucleotide:Y17512
  Paracoccus denitrificans strain IAM12479 16S rRNA gene
• Gene Nucleotide:AF017097
  Paracoccus denitrificans F1-ATPase gamma-subunit (atpC) and F1-ATPase beta-subunit (atpB) genes, partial cds
• Gene Nucleotide:U31902
  Paracoccus denitrificans succinate dehydrogenase b-type cytochrome subunit (sdhC), succinate dehydrogenase hydrophobic membrane anchor (sdhD), succinate dehydrogenase flavoprotein subunit (sdhA), and succinate dehydrogenase iron-sulfur protein subunit (sdhB) genes, complete cds
• rRNA Operon Nucleotide:AB598745
  Paracoccus pantotrophus gene for 16S rRNA, partial sequence, strain: JCM 6892
• rRNA Operon Nucleotide:Y17511
  Paracoccus denitrificans strain JCM6892 16S rRNA gene
• rRNA Operon Nucleotide:AB681113
  Paracoccus pantotrophus gene for 16S rRNA, partial sequence, strain: NBRC 16712
• Genome Assembly:GCA_001313145
  Paracoccus denitrificans JCM 21484
• rRNA Operon Nucleotide:AB681862
  Paracoccus denitrificans gene for 16S rRNA, partial sequence, strain: NBRC 102528
• Genome Assembly:GCA_007989485
  Paracoccus denitrificans NBRC 102528
• rRNA Operon Nucleotide:NR_119264
  Paracoccus denitrificans strain DSM 413 16S ribosomal RNA, partial sequence
• Genome Assembly:GCA_900100045
  Paracoccus denitrificans DSM 413
• rRNA Operon Nucleotide:Y16929
  Paracoccus denitrificans 16S rRNA gene, strain DSM 413

Associated Publications (8)

• DOI: 10.1099/00207713-49-2-645
  Rainey FA, Kelly DP, Stackebrandt E, Burghardt J, Hiraishi A, Katayama Y, Wood AP (1999). A re-evaluation of the taxonomy of Paracoccus denitrificans and a proposal for the combination Paracoccus pantotrophus comb. nov.
• DOI: 10.1128/JB.185.13.3753-3763.2003
  Bartosik D, Sochacka M, Baj J (2003). Identification and characterization of transposable elements of Paracoccus pantotrophus.
• DOI: 10.1080/10934529.2015.1094336
  Prachakittikul P, Wantawin C, Noophan PL, Boonapatcharoen N (2015). ANAMMOX-like performances for nitrogen removal from ammonium-sulfate-rich wastewater in an anaerobic sequencing batch reactor.
• DOI: 10.1093/oxfordjournals.jbchem.a121832
  Ohkubo S, Iwasaki H, Hori H, Osawa S (1986). Evolutionary relationship of denitrifying bacteria as deduced from 5S rRNA sequences.
• DOI: 10.1128/jb.168.1.455-457.1986
  Wee S, Madiraju MV, Wilkinson BJ (1986). Iron-dependent production of a heat-modifiable, 23,000-Mr outer membrane protein in Paracoccus denitrificans.
• DOI: 10.1021/bi00310a022
  Timkovich R, Cork MS, Taylor PV (1984). 1H NMR spectroscopy of Paracoccus denitrificans cytochrome c-550.
• DOI: 10.1002/prot.340230217
  Hirsch A, Wacker T, Weckesser J, Diederichs K, Welte W (1995). Purification, characterization, crystallization, and preliminary X-ray results from Paracoccus denitrificans porin.
• DOI: 10.1099/ijsem.0.003226
  Heo J, Cho HY, Kim JS, Hong SB, Kwon SW, Kim SJ (2019). Paracoccus suum sp. nov., isolated from a pig farm dust collector.

Outside links and data sources

• StrainInfo DOI: 10.60712/SI-ID92366.3

Retrieved 5 months ago via StrainInfo API (CC BY 4.0)

Metadata

Cannonical URL

https://seqco.de/s:32059

Local history

• Registered 11 months ago
• Last modified 5 months ago