Chaumeil, Pierre-Alain


Publications
4

Proposal of names for 329 higher rank taxa defined in the Genome Taxonomy Database under two prokaryotic codes

Citation
Chuvochina et al. (2023). FEMS Microbiology Letters 370
Names
Binataceae Binatales Binatia Hydrothermia Hydrothermales Hydrothermaceae Azobacteroidaceae Bipolaricaulales Bipolaricaulaceae Bipolaricaulia Hepatobacteraceae Hepatoplasmataceae Johnevansiaceae Johnevansiales Kapaibacteriaceae Kapaibacteriales Magnetobacteriaceae Methylomirabilaceae Methylomirabilales Methylomirabilia Muiribacteriaceae Muiribacteriales Muiribacteriia Nucleicultricaceae Obscuribacteraceae Promineifilaceae Promineifilales Pseudothioglobaceae Puniceispirillaceae Puniceispirillales Saccharimonadaceae Saccharimonadales Tenderiaceae Tenderiales Thermobaculaceae Thermobaculales Desulforudaceae Methylomirabilota Cloacimonadia Cloacimonadales Cloacimonadaceae Kapaibacteriia “Poriferisulfidales” Leptolyngbyaceae Vampirovibrionia Vampirovibrionales Vampirovibrionaceae “Paceibacteria” Desulfurobacteriia Hydrogenothermales Phormidesmidales Phormidesmidaceae Elainellales Elainellaceae Thermosulfidibacteraceae Thermosulfidibacterales Thermosulfidibacteria Thermosulfidibacterota Mahellaceae Mahellales Acidaminobacteraceae Peptostreptococcales Anaerovoracaceae Caminicellaceae Filifactoraceae Natronincolaceae Thermotaleaceae Tindalliaceae Carboxydocellaceae Carboxydocellales Thermincolia Thermincolales Dethiosulfatibacteraceae Caldisalinibacter Clostridiisalibacteraceae Clostridiisalibacter Acetivibrionales Acetivibrio Acetivibrionaceae Caloramatoraceae Oxobacteraceae Caldicellulosiruptorales Caldicellulosiruptoraceae Caldicoprobacterales Christensenellales Lachnospirales Lutisporales Lutisporaceae Monoglobales Monoglobaceae Proteiniboraceae Sedimentibacteraceae Thermaerobacteraceae Thermaerobacterales Thermaerobacteria Wohlfahrtiimonadaceae Oceanococcaceae Neiellaceae Thermicanaceae Thermicanales Gemellaceae Staphylococcales Salinicoccaceae Exiguobacteriaceae Exiguobacteriales Halobacteriota Methanoliparia Methanonatronarchaeia Methanosarcinia Methanocellia Methanosphaerulaceae Methanofollaceae Methanoculleaceae Pseudohongiellaceae Ahniellaceae Marinicellaceae Chitinimonadaceae Chitinimonas Amphibacillaceae Brevinematia Jeotgalibacillaceae Natranaerobiia Alicyclobacillia Leptospiria Rhodomicrobiaceae Methyloligellaceae Acetobacterales Piscirickettsiales Francisellales Thermoplasmatota Brachyspiria “Bradymonadia” “Paceibacterales” “Paceibacteraceae”
Abstract
Abstract The Genome Taxonomy Database (GTDB) is a taxonomic framework that defines prokaryotic taxa as monophyletic groups in concatenated protein reference trees according to systematic criteria. This has resulted in a substantial number of changes to existing classifications (https://gtdb.ecogenomic.org). In the case of union of taxa, GTDB names were applied based on the priority of publication. The division of taxa or change in rank led to the formation of new Latin names above

Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life

Citation
Parks et al. (2017). Nature Microbiology 2 (11)
Names
Binatus soli Ts Binatus
Abstract
AbstractChallenges in cultivating microorganisms have limited the phylogenetic diversity of currently available microbial genomes. This is being addressed by advances in sequencing throughput and computational techniques that allow for the cultivation-independent recovery of genomes from metagenomes. Here, we report the reconstruction of 7,903 bacterial and archaeal genomes from >1,500 public metagenomes. All genomes are estimated to be ≥50% complete and nearly half are ≥90% complete with ≤5%