El Komy, Mahmoud H.

<p>Huanglongbing (HLB), caused by <em>Candidatus </em>Liberibacter asiaticus (CLas), continues to challenge citrus production in Saudi Arabia. Although HLB is widespread, there is still limited understanding of how temperature, season, host species, and the type of tissue sampled influence the reliability of CLas detection. In this regard, 123 CLas-positive samples sourced from major citrus-growing areas were analyzed. These samples included data from 4 major citrus species and 4 tissue types. Additionally, cycle threshold<strong> </strong>(Ct) values obtained through quantitative PCR for each sample were used to examine how climate and CLas interact in bacterial detection. As lower Ct values indicate higher bacterial abundance, an analysis of covariance (ANCOVA) was conducted to assess the influence of season, tissue type, citrus species, and average seasonal temperature on Ct values. The results demonstrated significant differences among tissue types, with petiole and midrib tissues exhibiting consistently lower Ct values. Additionally, lower Ct values were observed in spring and autumn, and higher Ct values in warmer summers and colder winters, based on average temperatures. Among the citrus species, only <em>Citrus limon</em> illustrated a prominent increase in CLas levels as temperatures increased. CLas levels in <em>C. limon</em> showed only minor fluctuations with temperature. Taken together, these results indicated that temperature gradients strongly shape CLas population levels in Saudi Arabia and influence the reliability of pathogen detection. Considering climatic context, along with tissue type and season can substantially improve sampling strategies and enhance the effectiveness of HLB monitoring programs in arid and semi-arid citrus production systems.</p>

Citrus greening disease was first reported in Saudi Arabia during the 1970s when characteristic foliar and fruit symptoms were observed in commercial citrus groves. However, ‘Candidatus Liberibacter asiaticus’ (CLas) was not detected in symptomatic trees until 1981 to 1984 when CLas-like cells were observed by transmission electron microscopy in leaves collected from symptomatic citrus groves in southwestern Saudi Arabia. Despite the anticipated establishment of the CLas-Asian citrus psyllid (ACP) (Diaphorina citri Kuwayama) pathosystem, CLas presence has not been verified in suspect trees nor have ACP infestations been documented. Given the recent expansion of citrus production in Saudi Arabia, a systematic country-wide survey was carried out to determine the potential CLas distribution in the 13 citrus-growing regions of the country. Citrus trees were surveyed for the presence of CLas-psyllid vector(s) and characteristic disease symptoms in commercial and urban citrus trees. Adult psyllids collected from infested citrus trees were identified as ACP based on morphological characteristics. Real-time quantitative PCR amplification (qPCR) of the CLas β-subunit of the ribonucleotide reductase (RNR) gene from citrus leaf and fruit samples and/or ACP adults revealed that trees were positive for CLas detection in 10 of the 13 survey regions; however, CLas was undetectable in ACP adults. Phylogenetic and single nucleotide polymorphism (SNP) analyses of a PCR-amplified, cloned fragment of the CLas 16S rRNA gene (∼1.1 kbp) indicated Saudi Arabian isolates were most closely related to Florida, U.S.A., isolates. Analysis of climate variables indicated that the distribution of the ACP-CLas pathosystem observed in Saudi Arabia was consistent with published predictions of terrains most likely to support establishment.

In Saudi Arabia (SA), the citrus greening disease is caused by ‘Candidatus Liberibacter asiaticus’ (CLas) transmitted by the Asian citrus psyllid (ACP) Diaphorina citri. The origin and route(s) of the ACP-CLas pathosystem invasion in SA have not been studied. Adult ACP were collected from citrus trees in SA and differentiated by analysis of the mitochondrial cytochrome oxidase I (mtCOI) and nuclear copper transporting protein (atox1) genes. A phylogenetic analysis of the Wolbachia spp. surface protein (wsp) gene was used to identify the ACP-associated Wolbachia spp. A phylogenetic analysis of the atox1 and mtCOI gene sequences revealed one predominant ACP haplotype most closely related to the Indian subcontinent founder populations. The detection and identification of CLas in citrus trees were carried out by polymerase chain reaction (PCR) amplification and sequencing of the 16S rDNA gene. The CLas-integrated prophage genomes were sequenced, annotated, and used to differentiate CLas populations. The ML and ASTRAL trees reconstructed with prophages type 1 and 2 genome sequences, separately and concatenated, resolved two major lineages, CLas-1 and -2. The CLas-1 clade, reported here for the first time, consisted of isolates from SA isolates and Pakistan. The CLas-2 sequences formed two groups, CLas-2-1 and -2-2, previously the ‘Asiatic’ and ‘Floridian’ strains, respectively. Members of CLas-2-1 originated from Southeast Asia, the USA, and other worldwide locations, while CLas-2-2 was identified only in Florida. This study provides the first snapshot into the status of the ACP-CLas pathosystem in SA. In addition, the results provide new insights into the pathosystem coevolution and global invasion histories of two ACP-CLas lineages with a predicted center of origin in South and Southeast Asia, respectively.