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Authors Lim

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Lim, Yeonjung


Publications
2

CitationNamesAbstract
Complete genome sequence of "Candidatus Methylolitoribacter marinus" strain IMCC14736, an OM43 clade marine methylotroph from the East Sea, Korea Kim et al. (2026). Korean Journal of Microbiology 62 (1) “Methylolitoribacter marinus”
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Cultivation of marine bacteria of the SAR202 clade Lim et al. (2023). Nature Communications 14 (1) Lucifugimonadaceae Lucifugimonadales Lucifugimonas Lucifugimonas marina Ts
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Complete genome sequence of "Candidatus Methylolitoribacter marinus" strain IMCC14736, an OM43 clade marine methylotroph from the East Sea, Korea
Strain IMCC14736, isolated from Korean coastal seawater by dilution-to-extinction culturing, represents a novel member of the OM43 clade within Methylophilaceae. The complete genome consists of a single contig of 1,286,469 bp with a DNA G + C content of 34.3% and encodes 1,358 predicted proteins. Genomic analysis revealed lanthanide-dependent methanol dehydrogenase genes and related C1 metabolism pathways. Based on phylogenetic evidence, the authors propose the name "Candidatus Methylolitoribacter marinus" for this strain.
Cultivation of marine bacteria of the SAR202 clade
AbstractBacteria of the SAR202 clade, within the phylum Chloroflexota, are ubiquitously distributed in the ocean but have not yet been cultivated in the lab. It has been proposed that ancient expansions of catabolic enzyme paralogs broadened the spectrum of organic compounds that SAR202 bacteria could oxidize, leading to transformations of the Earth’s carbon cycle. Here, we report the successful cultivation of SAR202 bacteria from surface seawater using dilution-to-extinction culturing. The growth of these strains is very slow (0.18–0.24 day−1) and is inhibited by exposure to light. The genomes, of ca. 3.08 Mbp, encode archaella (archaeal motility structures) and multiple sets of enzyme paralogs, including 80 genes coding for enolase superfamily enzymes and 44 genes encoding NAD(P)-dependent dehydrogenases. We propose that these enzyme paralogs participate in multiple parallel pathways for non-phosphorylative catabolism of sugars and sugar acids. Indeed, we demonstrate that SAR202 strains can utilize several substrates that are metabolized through the predicted pathways, such as sugars ʟ-fucose and ʟ-rhamnose, as well as their lactone and acid forms.
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