Genome sc|0001016

Genomics

Accession

NCBI Assembly:GCA_031290095.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 95.6%
• Contamination: 0.0%
• Quality: 95.6

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

96.0 ×

Source

• BioSample: SAMN21242507
• BioSample: SAMN19322099

Other features

• G+C Content: 57.3%
• Coding Density: 87.46%
• Codon Table: 11
• N50: 27,838 bp
• Contigs: 97
• Largest Contig: 72,165 bp
• Assembly Length: 1,618,761 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

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Last modified 2 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN21242507
• BioSample: SAMN19322099

Date

Collection Date: 2014-09-01

Location

Lat Lon: 28.214046 S 153.126037 E

Toponym

Geo Loc Name: Australia: near Lamington National Park, Queensland

Environment

Sample Type: metagenomic assembly

Isolation Source: termite gut

Env Broad Scale: terrestrial biome

Env Local Scale: woodland biome

Env Medium: tropical woodland biome

Other

Host: Porotermes adamsoni

Package

Ncbi Submission Package: MIMAG.host-associated.6.0 • MIMS.me.host-associated.6.0

Biosamplemodel: MIMAG.host-associated • MIGS/MIMS/MIMARKS.host-associated

All retrieved samples

• SAMN21242507: MIMAG Metagenome-assembled Genome sample from Candidatus Methanoplasma porotermitis
• SAMN19322099: Termite gut metagenome of Porotermes adamsoni from near Lamington National Park, Queensland, Australia - Po218

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Metadata retrieved 2 months ago