Keywords: GSC:MIxS;MIMAG:5.0

BioSample Accession(s)

SAMN16074925

collection_date

2018-08-20

organism

Myxococcaceae bacterium

env_broad_scale

Freshwater

metagenomic

1

derived-from

This BioSample is a metagenomic assembly obtained from the freshwater metagenome BioSample: SAMN16091476

environmental-sample

1

env_local_scale

not collected

metagenome-source

freshwater metagenome

isolate

M069S2SP1A73QC

NCBI submission package

MIMAG.water.5.0

depth

Water surface (≈50 cm depth)

geo_loc_name

Canada:Quebec,Champlain Lake

env_medium

Microcystis colony

lat_lon

45.045833 N 73.132778 W

isolation_source

Microcystis colony from freshwater lake

sample-type

metagenomic assembly

BioSampleModel

MIMAG.water

ENA-FIRST-PUBLIC

2021-10-01

ENA-LAST-UPDATE

2021-10-01

Microcystis colonies were isolated directly from freshwater lakes

BioSample Accession(s)

SAMN16091476, SRS7557122

collection_date

2018-08-20

INSDC secondary accession

SRS7557122

NCBI submission package

Metagenome.environmental.1.0

organism

freshwater metagenome

geo_loc_name

Canada:Quebec,Champlain Lake

lat_lon

45.045833 N 73.132778 W

isolation_source

freshwater lake Microcystis colony M069S2

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2021-10-01

ENA-LAST-UPDATE

2021-10-01

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX9337682" alias="M069S2" center_name="SUB8117900" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX9337682</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB8117900">M069S2</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>DNA-seq of Microcystis colony</TITLE>
  <STUDY_REF accession="SRP288019">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP288019</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA662092</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>NEB (New England Biolabs) low input protocol.</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS7557122">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS7557122</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN16091476</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>M069S2</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>other</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 4000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS7557122</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1146110</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX9337682&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX9337682&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS-ID</TAG>
      <VALUE>4</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>