Xiheimicrobium aquaticum^Ts

Citation

Formal styling

Xiheimicrobium aquaticum^Ts corrig. Li et al., 2023 (priority 2025)

Effective publication

Li et al., 2023

Corrigendum

In SeqCode Registry from “Xihemicrobium aquatica” (sic)

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:kouay5c4 (validated)

Canonical URL

https://seqco.de/i:32845

Nomenclature

Rank

Species

Syllabication

a.qua'ti.cum

Etymology

L. neut. adj. aquaticum, living, growing, or found in the water

Nomenclatural type

NCBI Assembly: GCA_020247085.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The nomenclatural type for the species is the genomic assembly LLY-WYZ-4_1 (GCA_020247085.1). Genome is predicted to 7.36 Mb in 641 scaffolds. The GC content is 72.03%. Genome has complete bacteriochlorophyll synthesis pathways, and encodes reaction center proteins and other key enzymes, suggesting potential phototrophic lifestyle. Genomic assemblies for this species originated from freshwater lake.

Classification

Bacteria » Myxococcota » Myxococcia » Myxococcales » Myxococcaceae » Xiheimicrobium » Xiheimicrobium aquaticum^Ts

Parent

Xiheimicrobium

Pseudonyms

• Xihemicrobium aquatica (Original, corrected name)

Genomics

Accession

NCBI Assembly:GCA_020247085.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 100.0%
• Contamination: 3.92%
• Quality: 80.4

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 0 23S rRNAs
• tRNAs for 21 amino acids

Sequencing depth

10.2 ×

Source

• BioSample: SAMN16074925
• BioSample: SAMN16091476

Other features

• G+C Content: 72.03%
• Coding Density: 89.25%
• Codon Table: 11
• N50: 17,300 bp
• Contigs: 641
• Largest Contig: 69,770 bp
• Assembly Length: 7,356,658 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

CheckM2 was used for genome quality evaluation.

The genome assembly exhibits variability in completeness and contamination estimates across assessment tools:

• CheckM1: Completeness = 93.41%, Contamination = 1.61%
• CheckM2: Completeness = 100.00%, Contamination = 3.92%
• MiGA: Completeness = 96.2%, Contamination =  6.6%

Automated checks

Complete

See additional details

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Last modified 4 months ago

Metadata

Outside links and data sources

• GTDB Genome: GCA_020247085.1
• Wikispecies: Xiheimicrobium aquaticum
• Wikidata: Q136334498

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 3 months ago
• Submission process status
• Quality checks before valid publication

Registered

About 2 years ago by Li, Liuyang

Submitted

4 months ago by Li, Liuyang

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated

3 months ago by Palmer, Marike

Date of priority

2025-08-05 02:09 PM (UTC)