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cognitis nomina
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Genomes
sc|0000114
JSON
Genome sc|0000114
Name
“Makaraimicrobium thalassicum”
Database
NCBI Assembly
Accession
GCA_003644505.1
Genomics
Accession
NCBI Assembly:
GCA_003644505.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
98.43%
Contamination:
0.66%
Quality:
95.13
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 17 amino acids
Sequencing depth
34.22 ×
Source
BioSample: SAMN09215259
Other features
G+C Content:
48.46%
Coding Density:
92.32%
Codon Table:
11
N50:
25,046 bp
Contigs:
170
Largest Contig:
84,262 bp
Assembly Length:
2,118,535 bp
Ambiguous Assembly Fraction:
0.0%
Submitter comments
Completeness and contamination estimates as determined with CheckM v.2.
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2009-12-02
Location
Lat Lon:
29.52416667 N 113.57000000 W
Toponym
Geo Loc Name:
Mexico: Guaymas Basin, Gulf of California
Environment
Sample Type:
metagenomic assembly
Env Biome:
sediment
Isolation Source:
deep-sea hydrothermal vent sediments from dive 4571_4 depth 0-3 cm
Other
Depth:
0-3 cm
Temp:
10 C
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental
All retrieved samples
SAMN09215259
: Microbe sample from Candidatus Omnitrophota bacterium
Metadata retrieved
2 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN09215259
×
collection_date
2009-12-02
note
This biosample is a genomic assembly obtained from the sediment metagenome BioSample: SAMN06269079
temp
10 C
metagenome_source
marine sediment metagenome
organism
Candidatus Omnitrophota bacterium
environmental_sample
1
metagenomic
1
sample_type
metagenomic assembly
isolate
B134_G9
NCBI submission package
Microbe.1.0
depth
0-3 cm
geo_loc_name
Mexico: Guaymas Basin, Gulf of California
env_biome
sediment
lat_lon
29.52416667 N 113.57000000 W
isolation_source
deep-sea hydrothermal vent sediments from dive 4571_4 depth 0-3 cm
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2018-10-17
ENA-LAST-UPDATE
2023-04-17
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