collection_date

2009-12-02

note

This biosample is a genomic assembly obtained from the sediment metagenome BioSample: SAMN06269079

temp

10 C

metagenome_source

marine sediment metagenome

organism

Candidatus Omnitrophota bacterium

environmental_sample

1

metagenomic

1

sample_type

metagenomic assembly

isolate

B134_G9

NCBI submission package

Microbe.1.0

depth

0-3 cm

geo_loc_name

Mexico: Guaymas Basin, Gulf of California

env_biome

sediment

lat_lon

29.52416667 N 113.57000000 W

isolation_source

deep-sea hydrothermal vent sediments from dive 4571_4 depth 0-3 cm

BioSampleModel

Microbe, viral or environmental

ENA-FIRST-PUBLIC

2018-10-17

ENA-LAST-UPDATE

2023-04-17

collection_date

2009-12-02

INSDC secondary accession

SRS2839953

NCBI submission package

Metagenome.environmental.1.0

organism

marine sediment metagenome

geo_loc_name

Mexico: Guaymas Basin, Gulf of California

GOLD Ecosystem Classification

Environmental | Aquatic | Marine | Hydrothermal vents | Sediment

lat_lon

27.0183 N 111.3802 W

isolation_source

subseafloor sediment

BioSampleModel

Metagenome or environmental

ENA-FIRST-PUBLIC

2017-01-25

ENA-LAST-UPDATE

2022-10-21

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX3568921" alias="JGI-SRA-85797" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX3568921</PRIMARY_ID>
    <EXTERNAL_ID namespace="JGI">JGI-SRA-85797</EXTERNAL_ID>
    <SUBMITTER_ID namespace="">JGI-SRA-85797</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Guaymas Basin Sediment Guay9</TITLE>
  <STUDY_REF accession="SRP130036">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP130036</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA368391</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION/>
    <SAMPLE_DESCRIPTOR accession="SRS2839953">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS2839953</PRIMARY_ID>
        <EXTERNAL_ID namespace="BioSample">SAMN06269079</EXTERNAL_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>BOUGC</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>METAGENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
      <LIBRARY_CONSTRUCTION_PROTOCOL>Regular (DNA)</LIBRARY_CONSTRUCTION_PROTOCOL>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 2500</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS2839953</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA647389</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX3568921&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX3568921&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
</EXPERIMENT>
</EXPERIMENT_SET>