Makaraimicrobium thalassicumTs


Citation

Formal styling
Makaraimicrobium thalassicumTs Seymour et al., 2023 (priority 2024)
Effective publication
Seymour et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:xqyhj6of (validated)
Canonical URL
https://seqco.de/i:23710

Nomenclature

Rank
Species
Syllabication
tha.las'si.cum
Etymology
Gr. fem. n. thalassa, the sea; Gr. neut. adj. suff. -icum, suffix used with the sense of pertaining to; N.L. neut. adj. thalassicum, of the sea
Nomenclatural type
NCBI Assembly: GCA_003644505.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This species is the type for the genus Makaraimicrobium. Estimated genome size for this species is 2 Mb. %GC content for this genome is 48.46%. No large ORF is encoded by this species. A basic acetogenic pathway for fermentation of sugars is encoded by the genome of this species. This may couple the oxidative ATP-yielding reactions of the EMP pathway, with an Rnf complex for redox balancing and a horse-shoe type TCA cycle. Of the respiratory complexes, only a respiratory F-type ATPase is encoded by this genome. Additionally, a "symbiotic" F-type ATPase and components for a Type-4 a pilus is encoded by the genome. The assembly for this species was recovered from a metagenomic sediment sample from a deep-sea hydrothermal vent from Guaymas Basin, Gulf of California, Mexico, where a temperature of 10 °C has been reported. The nomenclatural type for the species is the genome GCA_003644505.1.
Classification
Bacteria » Omnitrophota » Gorgyraeia » Tantalellales » Tantalellaceae » Makaraimicrobium » Makaraimicrobium thalassicumTs
Parent
Makaraimicrobium gtdb

Genomics

Accession
NCBI Assembly:GCA_003644505.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.43%
  • Contamination: 0.66%
  • Quality: 95.13
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 17 amino acids
Sequencing depth
34.22 ×
Source
Other features
  • G+C Content: 48.46%
  • Coding Density: 92.32%
  • Codon Table: 11
  • N50: 25,046 bp
  • Contigs: 170
  • Largest Contig: 84,262 bp
  • Assembly Length: 2,118,535 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination estimates as determined with CheckM v.2.
Automated checks
Complete

Last modified 29 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Almost 4 years ago by Palmer, Marike
Submitted
About 2 years ago by Palmer, Marike
Curators
Validated
Over 1 year ago by Rodriguez-R, Luis M
Date of priority
2024-07-12 07:11 PM (UTC)

Publications
1

Citation Title
Seymour et al., 2023, Nature Microbiology Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota
Effective publication



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