Makaraimicrobium thalassicumTs


Citation

Formal styling
Makaraimicrobium thalassicumTs Seymour et al., 2023 (valid 2024)
Effective publication
Seymour et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:xqyhj6of (validated)
Canonical URL
https://seqco.de/i:23710

Nomenclature

Rank
Species
Syllabication
tha.las'si.cum
Etymology
Gr. fem. n. thalassa, the sea; Gr. neut. adj. suff. -icum, suffix used with the sense of pertaining to; N.L. neut. adj. thalassicum, of the sea
Nomenclatural type
NCBI Assembly: GCA_003644505.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This species is the type for the genus Makaraimicrobium. Estimated genome size for this species is 2 Mb. %GC content for this genome is 48.46%. No large ORF is encoded by this species. A basic acetogenic pathway for fermentation of sugars is encoded by the genome of this species. This may couple the oxidative ATP-yielding reactions of the EMP pathway, with an Rnf complex for redox balancing and a horse-shoe type TCA cycle. Of the respiratory complexes, only a respiratory F-type ATPase is encoded by this genome. Additionally, a "symbiotic" F-type ATPase and components for a Type-4 a pilus is encoded by the genome. The assembly for this species was recovered from a metagenomic sediment sample from a deep-sea hydrothermal vent from Guaymas Basin, Gulf of California, Mexico, where a temperature of 10 °C has been reported. The nomenclatural type for the species is the genome GCA_003644505.1.
Classification
Bacteria » Omnitrophota » “Gorgyraia” » “Tantalellales” » “Tantalellaceae” » Makaraimicrobium » Makaraimicrobium thalassicumTs
Parent
Makaraimicrobium gtdb

Genomics

Accession
NCBI Assembly:GCA_003644505.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.43%
  • Contamination: 0.66%
  • Quality: 95.13
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 17 amino acids
Sequencing depth
34.22 ×
Source
Other features
  • G+C Content: 48.46%
  • Coding Density: 92.32%
  • Codon Table: 11
  • N50: 25,046 bp
  • Contigs: 170
  • Largest Contig: 84,262 bp
  • Assembly Length: 2,118,535 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination estimates as determined with CheckM v.2.
Automated checks
Complete
See additional details

Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Palmer, Marike about 2 years ago
Submitted by
Palmer, Marike 5 months ago
Curators
Validated by
Rodriguez-R, Luis M 14 days ago
Date of priority
2024-07-12 07:11 PM (UTC)

Publications
1

Citation Title
Seymour et al., 2023, Nature Microbiology Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota
Effective publication



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