Genome sc|0000012

Genomics

Accession

NCBI Assembly:JAJEQM000000000

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 99.1%
• Contamination: 2.8%
• Quality: 85.1

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

135.0 ×

Source

• BioSample: SAMN22081883

Other features

• G+C Content: 37.82%
• Coding Density: 90.24%
• Codon Table: 11
• N50: 167,425 bp
• Contigs: 47
• Largest Contig: 292,115 bp
• Assembly Length: 3,087,174 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

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Last modified about 1 month ago

Sample Metadata

BioSample entries

• BioSample: SAMN22081883

Date

Collection Date: 2020-11-08

Location

Lat Lon: 50.776920 N 6.043417 E

Toponym

Geo Loc Name: Germany: Aachen

Environment

Isolation Source: feces

Env Broad Scale: Human gut microbiome

Env Local Scale: Human gut

Env Medium: Feces

Other

Host: Homo sapiens

Rel To Oxygen: anaerobe

Package

Ncbi Submission Package: MIGS.ba.human-gut.6.0

Biosamplemodel: MIGS/MIMS/MIMARKS.human-gut

All retrieved samples

• SAMN22081883: Genome of pure isolates

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Metadata retrieved about 1 month ago