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Hominilimicola

Citation

Formal styling
Hominilimicola Afrizal et al. 2023
Effective publication
Afrizal et al., 2022
SeqCode status
Valid (ICNP)
Canonical URL
https://seqco.de/i:23431

Nomenclature

Rank
Genus
Inferred stem
Hominilimicol-
Etymology
Hominilimicola (Ho.mi.ni.li.mi’co.la. L. masc. n. homo, a human being; L. masc. n. limus, dung; L. masc./fem. suffix -cola, an inhabitant of; N.L. masc. n. Hominilimicola, a microbe from the faeces of humans). 
Nomenclatural type
NCBI Assembly: JAJEQM000000000
Nomenclatural status
Validly published under the ICNP

Taxonomy

Description
The closest relatives based on 16S rRNA gene sequence similarity are species within the order Eubacteriales and family Oscillospiraceae, with the highest similarity to Monoglobus pectinilyticus (89.0%). The highest POCP comparison value to the closest known species was 38.0% (M. pectinilyticus). While GTDB-Tk placed the genome under the order ‘Monoglobales’ (not validly published) but unable to provide family-, genus- or species-level assignment, this genus is phylogenetically placed into the family Oscillospiraceae (phylum Firmicutes) based on genome tree analysis. It formed a unique distinct branch to the only closest cultured relative (M. pectinilyticus), confirming the novelty of this genus. The type species is Hominilimicolafabiformis.

Classification
Recursion found: Hominilimicola
Parent
Hominilimicola
Alternative placements
Children (2)
Taxonomic status
Correct name

Genomics

Accession
NCBI Assembly:JAJEQM000000000
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.1%
  • Contamination: 2.8%
  • Quality: 85.1
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
135.0 ×
Source
Other features
  • G+C Content: 37.82%
  • Coding Density: 90.24%
  • Codon Table: 11
  • N50: 167,425 bp
  • Contigs: 47
  • Largest Contig: 292,115 bp
  • Assembly Length: 3,087,174 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details
Last modified 5 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Afrizal, Afrizal over 2 years ago

Publications
1

Citation Title
Afrizal et al., 2022, Environmental Microbiology Anaerobic single‐cell dispensing facilitates the cultivation of human gut bacteria
Effective publication


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