SeqCode Registry
cognitis nomina
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Genomes
sc|0000120
JSON
Genome sc|0000120
Name
“Pluralincolimonas frigidipaludosa”
Database
NCBI Assembly
Accession
GCA_003141835.1
Genomics
Accession
NCBI Assembly:
GCA_003141835.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
98.82%
Contamination:
0.06%
Quality:
98.52
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
21.27 ×
Source
BioSample: SAMN08180098
Other features
G+C Content:
51.75%
Coding Density:
95.69%
Codon Table:
11
N50:
208,883 bp
Contigs:
11
Largest Contig:
269,495 bp
Assembly Length:
1,566,961 bp
Ambiguous Assembly Fraction:
0.0065%
Submitter comments
Completeness and contamination estimated with CheckM v. 2.
Automated checks
Complete
Sample Metadata
Date
Collection Date:
2012-08-23
Location
Lat Lon:
68.3533 N 19.0469 E
Toponym
Geo Loc Name:
Sweden: Stordalen Mire
Environment
Sample Type:
metagenomic assembly
Isolation Source:
permafrost active layer soil
Other
Host:
not applicable
Depth:
0.47-0.5
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental
All retrieved samples
SAMN08180098
: MAG Omnitrophica_fen_1319 from metagenome 20120800_E1X
Metadata retrieved
2 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN08180098
×
strain
not applicable
altitude
363 m
collection_date
2012-08-23
organism
Candidatus Omnitrophota bacterium
metagenomic
1
sample_type
metagenomic assembly
environmental-sample
1
metagenome-source
peat metagenome
isolate
fen_1319
NCBI submission package
Microbe.1.0
depth
0.47-0.5
host
not applicable
name
note
geo_loc_name
Sweden: Stordalen Mire
lat_lon
68.3533 N 19.0469 E
value
This BioSample is a metagenomic assembly obtained from the 20120800_E1X metagenome BioSample: SAMN07125087.
isolation_source
permafrost active layer soil
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2018-05-19
ENA-LAST-UPDATE
2023-04-17
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