Pluralincolimonas frigidipaludosaTs


Citation

Formal styling
Pluralincolimonas frigidipaludosaTs Seymour et al., 2023 (valid 2024)
Effective publication
Seymour et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:xqyhj6of (validated)
Canonical URL
https://seqco.de/i:23728

Nomenclature

Rank
Species
Syllabication
fri.gi.di.pa.lu.do'sa
Etymology
L. masc. adj. frigidus, cold; L. fem. adj. paludosa, boggy or marshy; N.L. fem. adj. frigidipaludosa, of a cold marsh or bog
Nomenclatural type
NCBI Assembly: GCA_003141835.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This species is the type for the genus Pluralincolimonas. Estimate genome size for the species is 1.6 Mb, with a %GC of 51.75 %. This species encode an ADP/ATP translocase, and respiratory complexes I and V. All components investigated for the production of a Type-4a pilus is encoded by genomes of this species, as well as a cytoplasmic Group A3 [FeFe] hydrogenase. Coupled with the Group A3 [FeFe] hydrogenase, a reversible acetyl-CoA synthetase may indicate acetogenesis in this species, through the production of acetate from acetyl-CoA by the fermentation of glucose and nucleotides. Through the use of respiratory complex I, oxidized NAD+ is provided and a proton gradient across the membrane is maintained, while the respiratory F-type ATPase (complex V) produces ATP. Genome data for this species originate from a permafrost sample from Stordalen Mire, Sweden, where a pH of 4.8 was reported. The nomenclatural type for the species is the genome GCA_003141835.1.
Classification
Bacteria » Omnitrophota » “Gorgyraia” » Pluralincolimonadales » Pluralincolimonadaceae » Pluralincolimonas » Pluralincolimonas frigidipaludosaTs
Parent
Pluralincolimonas gtdb

Genomics

Accession
NCBI Assembly:GCA_003141835.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 98.82%
  • Contamination: 0.06%
  • Quality: 98.52
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
21.27 ×
Source
Other features
  • G+C Content: 51.75%
  • Coding Density: 95.69%
  • Codon Table: 11
  • N50: 208,883 bp
  • Contigs: 11
  • Largest Contig: 269,495 bp
  • Assembly Length: 1,566,961 bp
  • Ambiguous Assembly Fraction: 0.0065%
Submitter comments
Completeness and contamination estimated with CheckM v. 2.
Automated checks
Complete
See additional details

Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Palmer, Marike about 2 years ago
Submitted by
Palmer, Marike 5 months ago
Curators
Validated by
Rodriguez-R, Luis M 14 days ago
Date of priority
2024-07-12 07:11 PM (UTC)

Publications
1

Citation Title
Seymour et al., 2023, Nature Microbiology Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota
Effective publication



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