Genome sc|0000122

Genomics

Accession

NCBI Assembly:GCA_013626165.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 99.54%
• Contamination: 0.08%
• Quality: 99.14

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

30.0 ×

Source

• BioSample: SAMN06718446
• BioSample: SAMD00019088

Other features

• G+C Content: 37.82%
• Coding Density: 87.86%
• Codon Table: 11
• N50: 98,468 bp
• Contigs: 22
• Largest Contig: 182,807 bp
• Assembly Length: 1,273,615 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completeness and contamination estimates determined with CheckM v. 2.

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2011 • 2011-09

Location

Lat Lon: 38.6214 N 123.133 W • 38.621133 N 123.133567 W

Toponym

Geo Loc Name: USA: California, The Cedars highly alkaline spring • USA: CA, Sonoma

Environment

Sample Type: metagenomic assembly

Env Biome: Serpentinized groundwater

Isolation Source: serpentinized groundwater

Env Broad Scale: freshwater biome

Env Local Scale: mineral spring

Env Medium: ground water

Other

Ph: 11.6 • 11.5

Depth: 0.4 m • surface

Temp: 18 degree C • 18

Rel To Oxygen: anaerobe

Package

Ncbi Submission Package: Microbe.1.0 • MIMS.me.water.6.0

Biosamplemodel: Microbe, viral or environmental • MIMS.me.water

All retrieved samples

• SAMN06718446: uncultured bacterium Unc6
• SAMD00019088: MIMS Environmental/Metagenome sample from groundwater metagenome

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Metadata retrieved 4 months ago