Refined draft genome of bin-genome Unc6 extracted from metagenome at The Cedars serpentinization springs

collection_date

2011

temp

18 degree C

rel_to_oxygen

anaerobe

metagenome_source

groundwater metagenome

organism

bacterium Unc6

metagenomic

TRUE

derived-from

This biosample is a metagenomic assembly obtained from the groundwater metagenome BioSample: SAMD00019088.

sample_type

metagenomic assembly

environmental-sample

TRUE

samp_collect_device

filtration

isolate

Unc6

NCBI submission package

Microbe.1.0

depth

0.4 m

pH

11.6

geo_loc_name

USA: California, The Cedars highly alkaline spring

env_biome

Serpentinized groundwater

lat_lon

38.6214 N 123.133 W

biomaterial_provider

Shino Suzuki

isolation_source

serpentinized groundwater

BioSampleModel

Microbe, viral or environmental

ENA-FIRST-PUBLIC

2018-05-31

ENA-LAST-UPDATE

2021-07-22

Keywords: GSC:MIxS;MIMS:6.0

collection_date

2011-09

samp_store_dur

-80

temp

18

INSDC secondary accession

DRS047967

calcium

1.2 mM

organism

groundwater metagenome

env_broad_scale

freshwater biome

ammonium

Below the deteciton limit (2 microM)

nitrate

Below the deteciton limit (2 microM)

project_name

The Cedars metagenome

samp_store_loc

-80

samp_store_temp

-80

samp_collect_device

in-line filter

env_local_scale

mineral spring

sodium

2.0 mM

NCBI submission package

MIMS.me.water.6.0

depth

surface

ph

11.5

chloride

1.5 mM

geo_loc_name

USA: CA, Sonoma

redox_potential

-550 mV

env_medium

ground water

lat_lon

38.621133 N 123.133567 W

sample_name

BS5B_2011

BioSampleModel

MIMS.me.water

ENA-FIRST-PUBLIC

2017-06-30

ENA-LAST-UPDATE

2024-06-02

Metadata as EBI XML

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  <TITLE>Illumina HiSeq 2000 paired end sequencing of SAMD00019088</TITLE>
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