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Velesiimonas alkalicolaTs

Citation

Formal styling
Velesiimonas alkalicolaTs Seymour et al., 2023 (valid 2024)
Effective publication
Seymour et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:xqyhj6of (validated)
Canonical URL
https://seqco.de/i:23736

Nomenclature

Rank
Species
Syllabication
al.ka.li'co.la
Etymology
N.L. neut. n. alkali, alkaline; N.L. fem. suff. -cola, an inhabitant of; N.L. fem. n. alkalicola, inhabitant of alkaline environments
Nomenclatural type
NCBI Assembly: GCA_013626165.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This species is the nomenclatural type for the genus Velesiimonas. The predicted genome size of this species is quite small in comparison to other Omnitrophota, at approximately 1.3 Mb. The % GC content of the genome is 37.82 %. No parasitism- or predation-associated genes are encoded by the genome for this species, and limited genes for energy metabolism are predicted for this genome, although, like other members in the phylum, the Type-4a pilus machinery is encoded. An Rnf complex, along with a respiratory F-type ATPase (complex V) are encoded by the genome of this species. The anaerobic sample from which the genome was derived was taken from serpentinized groundwater from an alkaline spring, in the Cedars, California, USA. The nomenclatural type for the species is GCA_013626165.1.
Classification
Incertae sedis (Bacteria) » Velesiimonadales » Velesiimonadaceae » Velesiimonas » Velesiimonas alkalicolaTs
Parent
Velesiimonas gtdb

Genomics

Accession
NCBI Assembly:GCA_013626165.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 99.54%
  • Contamination: 0.08%
  • Quality: 99.14
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
30.0 ×
Source
Other features
  • G+C Content: 37.82%
  • Coding Density: 87.86%
  • Codon Table: 11
  • N50: 98,468 bp
  • Contigs: 22
  • Largest Contig: 182,807 bp
  • Assembly Length: 1,273,615 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination estimates determined with CheckM v. 2.
Automated checks
Complete
See additional details
Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Palmer, Marike about 2 years ago
Submitted by
Palmer, Marike 5 months ago
Curators
Validated by
Rodriguez-R, Luis M 14 days ago
Date of priority
2024-07-12 07:11 PM (UTC)

Publications
1

Citation Title
Seymour et al., 2023, Nature Microbiology Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota
Effective publication


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