JSON

Genome sc|0000130

Name

Velaminicoccus archaeovorusTs

Database

INSDC Nucleotide

Accession

CP019384.1

Genomics

Accession
INSDC Nucleotide:CP019384.1
Type
Enrichment Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
45.0 ×
Source
Other features
  • G+C Content: 52.9%
  • Coding Density: 89.92%
  • Codon Table: 11
  • N50: 1,974,201 bp
  • Contigs: 1
  • Largest Contig: 1,974,201 bp
  • Assembly Length: 1,974,201 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Closed genome obtained from physically enriched cells. 454 and illumina sequences. Published as closed genome. A GC-polymer within the closed genome is not completely covered by reads, thus it may be a linear genome.
Automated checks
Complete
Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 1997-01
Location
Lat Lon: 53.211 N 8.788 E
Toponym
Geo Loc Name: Germany: Osterholz-Scharmbeck
Environment
Env Material: sludge
Env Biome: wastewater
Isolation Source: municipal waste water treatment plant, activated sewage sludge
Other
Not detected
Package
Ncbi Submission Package: MIGS.ba.wastewater.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.wastewater
All retrieved samples
Metadata retrieved about 1 month ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license