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Velaminicoccus archaeovorusTs

Citation

Formal styling
Velaminicoccus archaeovorusTs corrig. Kizina et al., 2022 (priority 2024)
Effective publication
Kizina et al., 2022
Corrigendum
In SeqCode Registry from “Velamenicoccus archaeovorus” (sic)
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:pgdylp80 (validated)
Canonical URL
https://seqco.de/i:23450

Nomenclature

Rank
Species
Syllabication
ar.chae.o.vo'rus
Etymology
Gr. masc. adj. archaios, ancient; L. v. voro, to eat, to devour; N.L. masc. adj. archaeovorus, archaea (ancient microorganisms) devouring
Notes
The name was corrected from "Velamenicoccus archaeovorus" to Velaminicoccus archaeovorus in the SeqCode Registry. The authors of the effective publication were not in support of this change.
Nomenclatural type
INSDC Nucleotide: CP019384.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The species is represented by the phylotype and strain LiM and its genome (GenBank number CP019384). The genome of 1.97 Mb has a GC content of 52.9%. OP3 LiM was highly enriched in a limonene-degrading methanogenic enrichment culture. Cells are coccoid. They are ultramicrobacteria 0.2 μm in diameter and occur free living and attached to other microorganisms. The bacterium is maintained in slowly growing Methanosaeta-rich methanogenic enrichment cultures in freshwater medium with low concentrations of limonene as the carbon source at 28°C. It can be visualized by the FISH probe OP3-565.
Classification
Bacteria » Omnitrophota » Velaminicoccia » Velaminicoccales » Velaminicoccaceae » Velaminicoccus » Velaminicoccus archaeovorusTs
Parent
Velaminicoccus gtdb
Pseudonyms
  • Velamenicoccus archaeovorus (Original, corrected name)

Genomics

Accession
INSDC Nucleotide:CP019384.1
Type
Enrichment Genome
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
45.0 ×
Source
Other features
  • G+C Content: 52.9%
  • Coding Density: 89.92%
  • Codon Table: 11
  • N50: 1,974,201 bp
  • Contigs: 1
  • Largest Contig: 1,974,201 bp
  • Assembly Length: 1,974,201 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Closed genome obtained from physically enriched cells. 454 and illumina sequences. Published as closed genome. A GC-polymer within the closed genome is not completely covered by reads, thus it may be a linear genome.
Automated checks
Complete
See additional details
Last modified about 1 year ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
About 1 year ago by Palmer, Marike
Submitted
About 1 year ago by Palmer, Marike
Curators
Endorsed
About 1 year ago by St. John, Emily
Validated
About 1 year ago by Rodriguez-R, Luis M
Date of priority
2024-10-04 01:57 PM (UTC)

Publications
2

Citation Title
Seymour et al., 2023, Nature Microbiology Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota
Kizina et al., 2022, Applied and Environmental Microbiology Methanosaeta and “ Candidatus Velamenicoccus archaeovorus”
Effective publication


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