Genome sc|0001337

Genomics

Accession

NCBI Assembly:GCA_020328045.1

Type

Single-Cell Amplified Genome (SAG)

Estimated Quality Metrics

• Completeness: 93.82%
• Contamination: 1.31%
• Quality: 87.27

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 59.0%)
• tRNAs for 20 amino acids

Sequencing depth

70.0 ×

Source

• BioSample: SAMN21555665
• BioSample: SAMN21872208

Other features

• G+C Content: 35.3%
• Coding Density: 81.4%
• Codon Table: 11
• N50: 15,461 bp
• Contigs: 122
• Largest Contig: 42,587 bp
• Assembly Length: 1,252,079 bp
• Ambiguous Assembly Fraction: 0.0097%

Automated checks

Complete

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Last modified about 1 month ago

Sample Metadata

BioSample entries

• BioSample: SAMN21555665
• BioSample: SAMN21872208

Date

Collection Date: 2016-06-14

Location

Lat Lon: 41.806543 N 72.262216 W

Toponym

Geo Loc Name: USA: Connecticut

Environment

Sample Type: metagenomic assembly

Isolation Source: single protist cell from termite hindgut

Env Broad Scale: Forest

Env Local Scale: terrestrial

Env Medium: wood

Other

Host: Pyrsonympha vertens • termite

Package

Ncbi Submission Package: MIMAG.host-associated.6.0 • MISAG.host-associated.5.0

Biosamplemodel: MIMAG.host-associated • MISAG.host-associated

All retrieved samples

• SAMN21555665: MIMAG Metagenome-assembled Genome sample from Candidatus Endomicrobiellum pyrsonymphae
• SAMN21872208: MISAG Single Amplified Genome sample from Pyrsonympha vertens

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Metadata retrieved about 1 month ago