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Endomicrobiellum pyrsonymphae

This name contravenes at least one rule from the SeqCode, and it's at risk of being rejected:
  • Missing source data: The raw sequencing data should be available in INSDC databases (e.g., Sequence Read Archive)

Citation

Formal styling
Endomicrobiellum pyrsonymphae Mies et al., 2024
Effective publication
Mies et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:tm1bm3q2 (validated)
Canonical URL
https://seqco.de/i:32910

Nomenclature

Rank
Species
Syllabication
pyr.so.nym'phae
Etymology
N.L. gen. n. pyrsonymphae, of Pyrsonympha, referring to the host flagellate.
Nomenclatural type
NCBI Assembly: GCA_020328045.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The species comprises only single-cell amplified genomes. Colonizes the cytoplasm of Pyrsonympha vertens. Localized in the cytoplasm of Pyrsonympha vertens using FISH with a specific oligonucleotide probe. The species includes all bacteria with more than 95% average nucleotide identity (ANI) to the type genome. The GC content of the type strain is 35.3 mol% and the estimated genome size is 1.3Mbp.
Classification
Bacteria » Elusimicrobiota » Endomicrobiia » Endomicrobiales » Endomicrobiaceae » Endomicrobiellum » Endomicrobiellum pyrsonymphae
Parent
Endomicrobiellum gtdb

Genomics

Accession
NCBI Assembly:GCA_020328045.1
Type
Single-Cell Amplified Genome (SAG)
Estimated Quality Metrics
  • Completeness: 93.82%
  • Contamination: 1.31%
  • Quality: 87.27
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 59.0%)
  • tRNAs for 20 amino acids
Sequencing depth
70.0 ×
Source
Other features
  • G+C Content: 35.3%
  • Coding Density: 81.4%
  • Codon Table: 11
  • N50: 15,461 bp
  • Contigs: 122
  • Largest Contig: 42,587 bp
  • Assembly Length: 1,252,079 bp
  • Ambiguous Assembly Fraction: 0.0097%
Automated checks
Complete
See additional details
Last modified 8 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Almost 3 years ago by Mies, Undine Sophie
Submitted
About 2 years ago by Mies, Undine Sophie
Curators
Validated
About 2 years ago by Rodriguez-R, Luis M
Date of priority
2024-05-29 02:02 PM (UTC)

Publications
1

Citation Title
Mies et al., 2024, mBio Genome reduction and horizontal gene transfer in the evolution of Endomicrobia—rise and fall of an intracellular symbiosis with termite gut flagellates
Effective publication


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seqco.de/r:tm1bm3q2