Endomicrobiellum pyrsonymphae

Citation

Formal styling

Endomicrobiellum pyrsonymphae Mies et al., 2024

Effective publication

Mies et al., 2024

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:tm1bm3q2 (validated)

Canonical URL

https://seqco.de/i:32910

Nomenclature

Rank

Species

Syllabication

pyr.so.nym'phae

Etymology

N.L. gen. n. pyrsonymphae, of Pyrsonympha, referring to the host flagellate.

Nomenclatural type

NCBI Assembly: GCA_020328045.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The species comprises only single-cell amplified genomes. Colonizes the cytoplasm of Pyrsonympha vertens. Localized in the cytoplasm of Pyrsonympha vertens using FISH with a specific oligonucleotide probe. The species includes all bacteria with more than 95% average nucleotide identity (ANI) to the type genome. The GC content of the type strain is 35.3 mol% and the estimated genome size is 1.3Mbp.

Classification

Bacteria » Elusimicrobiota » Endomicrobiia » Endomicrobiales » Endomicrobiaceae » Endomicrobiellum » Endomicrobiellum pyrsonymphae

Parent

Endomicrobiellum

Genomics

Accession

NCBI Assembly:GCA_020328045.1

Type

Single-Cell Amplified Genome (SAG)

Estimated Quality Metrics

• Completeness: 93.82%
• Contamination: 1.31%
• Quality: 87.27

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 59.0%)
• tRNAs for 20 amino acids

Sequencing depth

70.0 ×

Source

• BioSample: SAMN21555665
• BioSample: SAMN21872208

Other features

• G+C Content: 35.3%
• Coding Density: 81.4%
• Codon Table: 11
• N50: 15,461 bp
• Contigs: 122
• Largest Contig: 42,587 bp
• Assembly Length: 1,252,079 bp
• Ambiguous Assembly Fraction: 0.0097%

Automated checks

Complete

See additional details

Metadata

Outside links and data sources

• GTDB Genome: GCA_020328045.1
• Wikispecies: Endomicrobiellum pyrsonymphae (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 4 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Mies, Undine Sophie 11 months ago

Submitted by

Mies, Undine Sophie 4 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Rodriguez-R, Luis M 4 months ago

Date of priority

2024-05-29 02:02 PM (UTC)