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Endomicrobiellum pyrsonymphae

Citation

Formal styling
Endomicrobiellum pyrsonymphae Mies et al., 2024
Effective publication
Mies et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:tm1bm3q2 (validated)
Canonical URL
https://seqco.de/i:32910

Nomenclature

Rank
Species
Syllabication
pyr.so.nym'phae
Etymology
N.L. gen. n. pyrsonymphae, of Pyrsonympha, referring to the host flagellate.
Nomenclatural type
NCBI Assembly: GCA_020328045.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The species comprises only single-cell amplified genomes. Colonizes the cytoplasm of Pyrsonympha vertens. Localized in the cytoplasm of Pyrsonympha vertens using FISH with a specific oligonucleotide probe. The species includes all bacteria with more than 95% average nucleotide identity (ANI) to the type genome. The GC content of the type strain is 35.3 mol% and the estimated genome size is 1.3Mbp.
Classification
Bacteria » Elusimicrobiota » Endomicrobiia » Endomicrobiales » Endomicrobiaceae » Endomicrobiellum » Endomicrobiellum pyrsonymphae
Parent
Endomicrobiellum

Genomics

Accession
NCBI Assembly:GCA_020328045.1
Type
Single-Cell Amplified Genome (SAG)
Estimated Quality Metrics
  • Completeness: 93.82%
  • Contamination: 1.31%
  • Quality: 87.27
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 59.0%)
  • tRNAs for 20 amino acids
Sequencing depth
70.0 ×
Source
Other features
  • G+C Content: 35.3%
  • Coding Density: 81.4%
  • Codon Table: 11
  • N50: 15,461 bp
  • Contigs: 122
  • Largest Contig: 42,587 bp
  • Assembly Length: 1,252,079 bp
  • Ambiguous Assembly Fraction: 0.0097%
Automated checks
Complete
See additional details
Last modified 4 days ago

Metadata

Outside links and data sources
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Local history
Registered by
Mies, Undine Sophie about 1 year ago
Submitted by
Mies, Undine Sophie 6 months ago
Curators
Validated by
Rodriguez-R, Luis M 6 months ago
Date of priority
2024-05-29 02:02 PM (UTC)

Publications
1

Citation Title
Mies et al., 2024, mBio Genome reduction and horizontal gene transfer in the evolution of Endomicrobia—rise and fall of an intracellular symbiosis with termite gut flagellates
Effective publication


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