Genome sc|0001339

Genomics

Accession

NCBI Assembly:GCA_020328155.1

Type

Single-Cell Amplified Genome (SAG)

Estimated Quality Metrics

• Completeness: 96.63%
• Contamination: 0.0%
• Quality: 96.63

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 66.0%)
• 1 23S rRNA (up to 27.0%)
• tRNAs for 19 amino acids

Sequencing depth

100.0 ×

Source

• BioSample: SAMN21555664
• BioSample: SAMN21872207

Other features

• G+C Content: 36.3%
• Coding Density: 77.12%
• Codon Table: 11
• N50: 86,172 bp
• Contigs: 23
• Largest Contig: 239,284 bp
• Assembly Length: 1,285,918 bp
• Ambiguous Assembly Fraction: 0.0064%

Automated checks

Complete

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Last modified about 1 month ago

Sample Metadata

BioSample entries

• BioSample: SAMN21555664
• BioSample: SAMN21872207

Date

Collection Date: 2016-06-15

Location

Lat Lon: 41.806543 N 72.262216 W

Toponym

Geo Loc Name: USA: Connecticut

Environment

Sample Type: metagenomic assembly

Isolation Source: single protist cell from termite hindgut

Env Broad Scale: Forest

Env Local Scale: terrestrial

Env Medium: wood

Other

Host: Trichonympha agilis • termite

Package

Ncbi Submission Package: MIMAG.host-associated.6.0 • MISAG.host-associated.5.0

Biosamplemodel: MIMAG.host-associated • MISAG.host-associated

All retrieved samples

• SAMN21555664: MIMAG Metagenome-assembled Genome sample from Candidatus Endomicrobiellum agilis
• SAMN21872207: MISAG Single Amplified Genome sample from Trichonympha agilis

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Metadata retrieved about 1 month ago