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Endomicrobiellum agilis

This name contravenes at least one rule from the SeqCode, and it's at risk of being rejected:
  • Missing source data: The raw sequencing data should be available in INSDC databases (e.g., Sequence Read Archive)

Citation

Formal styling
Endomicrobiellum agilis Mies et al., 2024
Effective publication
Mies et al., 2024
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:tm1bm3q2 (validated)
Canonical URL
https://seqco.de/i:32911

Nomenclature

Rank
Species
Syllabication
a'gi.lis
Etymology
L. gen. n. agilis, of Trichonympha agilis, referring to the host species.
Nomenclatural type
NCBI Assembly: GCA_020328155.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
The species comprises only metagenome-assembled genomes and single-cell amplified genomes. The species includes all bacteria with more than 95% average nucleotide identity (ANI) to the type genome. The GC content of the type genome is 36.0 mol% and the estimated genome size is 1.3 Mbp.
Classification
Bacteria » Elusimicrobiota » Endomicrobiia » Endomicrobiales » Endomicrobiaceae » Endomicrobiellum » Endomicrobiellum agilis
Parent
Endomicrobiellum gtdb

Genomics

Accession
NCBI Assembly:GCA_020328155.1
Type
Single-Cell Amplified Genome (SAG)
Estimated Quality Metrics
  • Completeness: 96.63%
  • Contamination: 0.0%
  • Quality: 96.63
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 66.0%)
  • 1 23S rRNA (up to 27.0%)
  • tRNAs for 19 amino acids
Sequencing depth
100.0 ×
Source
Other features
  • G+C Content: 36.3%
  • Coding Density: 77.12%
  • Codon Table: 11
  • N50: 86,172 bp
  • Contigs: 23
  • Largest Contig: 239,284 bp
  • Assembly Length: 1,285,918 bp
  • Ambiguous Assembly Fraction: 0.0064%
Automated checks
Complete
See additional details
Last modified 7 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Almost 3 years ago by Mies, Undine Sophie
Submitted
About 2 years ago by Mies, Undine Sophie
Curators
Validated
About 2 years ago by Rodriguez-R, Luis M
Date of priority
2024-05-29 02:02 PM (UTC)

Publications
1

Citation Title
Mies et al., 2024, mBio Genome reduction and horizontal gene transfer in the evolution of Endomicrobia—rise and fall of an intracellular symbiosis with termite gut flagellates
Effective publication


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seqco.de/r:tm1bm3q2