Genome sc|0000134

Genomics

Accession

NCBI Assembly:GCA_012514745.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 95.13%
• Contamination: 0.01%
• Quality: 95.08

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

267.74 ×

Source

• BioSample: SAMN13894456
• BioSample: SRS1791884
• BioSample: This BioSample is a metagenomic assembly obtained from the anaerobic digester metagenome reads deposited in SRR5007459

Other features

• G+C Content: 53.26%
• Coding Density: 91.13%
• Codon Table: 11
• N50: 85,350 bp
• Contigs: 31
• Largest Contig: 174,780 bp
• Assembly Length: 1,547,458 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

Completeness and contamination estimates performed with Check v. 2.

Automated checks

Complete

Sample Metadata

Date

Collection Date: not applicable • 2015-08-08

Location

Lat Lon: not applicable • 47.6525 N 122.3049 W

Toponym

Geo Loc Name: not applicable • USA:Washington, USA

Environment

Sample Type: metagenomic assembly

Isolation Source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks • Anaerobic biogas reactor

Env Broad Scale: not applicable

Env Local Scale: not applicable

Env Medium: not applicable

Gold Ecosystem Classification: Engineered | Bioreactor | Anaerobic | Unclassified | Unclassified

Other

Host: not applicable

Package

Ncbi Package: Generic.1.0

Ncbi Submission Package: MIMAG.6.0 • Metagenome.environmental.1.0

Biosamplemodel: MIMAG • Metagenome or environmental

All retrieved samples

• SAMN13894456: MIMAG0911
• SRS1791884: Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R1_A C13 SIP DNA
• This BioSample is a metagenomic assembly obtained from the anaerobic digester metagenome reads deposited in SRR5007459: Sample from Populus trichocarpa

---

Metadata retrieved 3 months ago