Genome sc|0000134


Database

NCBI Assembly

Accession

GCA_012514745.1

Genomics

Accession
NCBI Assembly:GCA_012514745.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.13%
  • Contamination: 0.01%
  • Quality: 95.08
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
267.74 ×
Source
Other features
  • G+C Content: 53.26%
  • Coding Density: 91.13%
  • Codon Table: 11
  • N50: 85,350 bp
  • Contigs: 31
  • Largest Contig: 174,780 bp
  • Assembly Length: 1,547,458 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination estimates performed with Check v. 2.
Automated checks
Complete

Last modified about 1 month ago

Sample Metadata

BioSample entries
Date
Collection Date: 2015-08-08
Location
Lat Lon: 47.6525 N 122.3049 W
Toponym
Geo Loc Name: USA:Washington, USA
Environment
Sample Type: metagenomic assembly
Isolation Source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks • Anaerobic biogas reactor
Gold Ecosystem Classification: Engineered | Bioreactor | Anaerobic | Unclassified | Unclassified
Other
Not detected
Package
Ncbi Submission Package: MIMAG.6.0Metagenome.environmental.1.0
Biosamplemodel: MIMAG • Metagenome or environmental
Additional Accessions
This BioSample is a metagenomic assembly obtained from the anaerobic digester metagenome reads deposited in SRR5007459
All retrieved samples

Metadata retrieved about 1 month ago

Sequencing Experiments

Biogas_R1_A C13 SIP DNA


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