Genome sc|0001358

Genomics

Accession

NCBI Assembly:GCA_031287855.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 94.38%
• Contamination: 0.0%
• Quality: 94.38

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 0 23S rRNAs
• tRNAs for 18 amino acids

Sequencing depth

94.0 ×

Source

• BioSample: SAMN21242617
• BioSample: SAMN19322101

Other features

• G+C Content: 31.3%
• Coding Density: 88.11%
• Codon Table: 11
• N50: 31,155 bp
• Contigs: 57
• Largest Contig: 77,402 bp
• Assembly Length: 1,263,672 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

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Last modified 2 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN21242617
• BioSample: SAMN19322101

Date

Collection Date: 2018-02-18

Location

Lat Lon: 3.377917 N 11.458056 E

Toponym

Geo Loc Name: Cameroon: Ebogo II, Mbalmayo

Environment

Sample Type: metagenomic assembly

Isolation Source: termite gut

Env Broad Scale: terrestrial biome

Env Local Scale: woodland biome

Env Medium: tropical woodland biome

Other

Host: Roisinitermes ebogoensis

Package

Ncbi Submission Package: MIMAG.host-associated.6.0 • MIMS.me.host-associated.6.0

Biosamplemodel: MIMAG.host-associated • MIGS/MIMS/MIMARKS.host-associated

All retrieved samples

• SAMN21242617: MIMAG Metagenome-assembled Genome sample from Endomicrobium sp.
• SAMN19322101: Termite gut metagenome of Roisinitermes ebogoensis from Ebogo II, Mbalmayo, Cameroon - Roe453

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Metadata retrieved 2 months ago