JSON

Genome sc|0000136

Name

“Duberdicusella sinuisediminis”

Database

NCBI Assembly

Accession

GCA_003644445.1

Genomics

Accession
NCBI Assembly:GCA_003644445.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 92.27%
  • Contamination: 0.21%
  • Quality: 91.22
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
67.05 ×
Source
Other features
  • G+C Content: 35.43%
  • Coding Density: 93.88%
  • Codon Table: 11
  • N50: 15,611 bp
  • Contigs: 117
  • Largest Contig: 58,968 bp
  • Assembly Length: 1,201,878 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination estimated with CheckM v. 2.
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2009-11-30
Location
Lat Lon: 29.52416667 N 113.57000000 W
Toponym
Geo Loc Name: Mexico: Guaymas Basin, Gulf of California
Environment
Sample Type: metagenomic assembly
Env Biome: sediment
Isolation Source: deep-sea hydrothermal vent sediments from dive 4569_2 depth 21-24 cm
Other
Depth: 21-24 cm
Temp: 41 C
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 4 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license