Duberdicusella sinuisediminisTs


Citation

Formal styling
Duberdicusella sinuisediminisTs Seymour et al., 2023 (valid 2024)
Effective publication
Seymour et al., 2023
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:xqyhj6of (validated)
Canonical URL
https://seqco.de/i:23742

Nomenclature

Rank
Species
Syllabication
si.nu.i.se.di.mi'nis
Etymology
L. masc. n. sinus, a bay; L. gen. n. sediminis, of sediment; N.L. gen. n. sinuisediminis, of sediment from a bay
Nomenclatural type
NCBI Assembly: GCA_003644445.1
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
This species is the nomenclatural type for the genus Duberdicusella. Estimated genome size for this species ranges between 1.3 to 1.8 Mb. GC content for this species is 34.9-35.9 %. No large ORFs are predicted for members of this species. Genes associated mainly with an acetogenic metabolic scheme, along with an Rnf complex, and respiratory complex V (F-type ATPase) are encoded by the genomes of the species. A conductive pilin, a membrane-bound Group 4g [NiFe] and cytoplasmic Group A3 [FeFe] hydrogenases, and all components for the tight-adherence complex (Tad) and Type-4a pili are encoded by the genomes. Additionally, a "symbiotic" F-type ATPase is also encoded by the genomes. All assemblies assigned to this species originated from deep-sea hydrothermal vent sediment samples from Guaymas Basin, Gulf of California, Mexico, with some derived from samples with a reported temperature of 28 °C. The type for the species is the genome GCA_003644525.1.
Classification
Bacteria » Omnitrophota » “Velamenicoccia” » Duberdicusellales » Duberdicusellaceae » Duberdicusella » Duberdicusella sinuisediminisTs
Parent
Duberdicusella gtdb

Genomics

Accession
NCBI Assembly:GCA_003644445.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 92.27%
  • Contamination: 0.21%
  • Quality: 91.22
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
67.05 ×
Source
Other features
  • G+C Content: 35.43%
  • Coding Density: 93.88%
  • Codon Table: 11
  • N50: 15,611 bp
  • Contigs: 117
  • Largest Contig: 58,968 bp
  • Assembly Length: 1,201,878 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completeness and contamination estimated with CheckM v. 2.
Automated checks
Complete
See additional details

Last modified about 1 month ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered by
Palmer, Marike about 2 years ago
Submitted by
Palmer, Marike 5 months ago
Curators
Validated by
Rodriguez-R, Luis M 14 days ago
Date of priority
2024-07-12 07:11 PM (UTC)

Publications
1

Citation Title
Seymour et al., 2023, Nature Microbiology Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota
Effective publication



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