Genome sc|0001364

Genomics

Accession

NCBI Assembly:GCF_002355835.1

Type

Single-Cell Amplified Genome (SAG)

Estimated Quality Metrics

• Completeness: 96.63%
• Contamination: 0.0%
• Quality: 96.63

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

422.0 ×

Source

• BioSample: SAMD00051155

Other features

• G+C Content: 35.2%
• Coding Density: 77.11%
• Codon Table: 11
• N50: 1,114,532 bp
• Contigs: 4
• Largest Contig: 1,114,532 bp
• Assembly Length: 1,130,840 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

---

Last modified about 1 month ago

Sample Metadata

BioSample entries

• BioSample: SAMD00051155

Date

Not detected

Location

Not detected

Toponym

Not detected

Environment

Env Medium: termite gut

Other

Host: Trichonympha agilis

Package

Ncbi Submission Package: MIGS.ba.host-associated.6.0

Biosamplemodel: MIGS.ba.host-associated

All retrieved samples

• SAMD00051155: Complete genome of Candidatus Endomicrobium trichonymphae phylotype Rs-D17 genomovar Ti2015 in the termite gut flagellate

---

Metadata retrieved about 1 month ago