Endomicrobiellum trichonymphae^Ts

Citation

Formal styling

Endomicrobiellum trichonymphae^Ts Mies et al., 2024

Effective publication

Mies et al., 2024

SeqCode status

Valid (SeqCode)

Register List

seqco.de/r:tm1bm3q2 (validated)

Canonical URL

https://seqco.de/i:32908

Nomenclature

Rank

Species

Syllabication

tri.cho.nym'phae

Etymology

N.L. gen. n. trichonymphae, of Trichonympha, referring to the host flagellate

Nomenclatural type

NCBI Assembly: GCF_002355835.1

Nomenclatural status

Validly published under the SeqCode

Taxonomy

Description

The species comprises only single-cell amplified genomes. Colonizes the cytoplasm of the cellulolytic protist Trichonympha agilis in the termite gut. Spindle-shaped cells (0.6 µm in length and 0.3 µm in diameter). The outer membrane forms tubular extensions into the cytoplasm of the host. Localized in the cytoplasm of flagellates of the genus Trichonympha using FISH with a specific oligonucleotide probe. The species includes all bacteria with more than 95% average nucleotide identity (ANI) to the type genome. The GC content of the type strain is 35.2 mol% and the estimated genome size is 1.1Mbp.

Classification

Bacteria » Elusimicrobiota » Endomicrobiia » Endomicrobiales » Endomicrobiaceae » Endomicrobiellum » Endomicrobiellum trichonymphae^Ts

Parent

Endomicrobiellum

Genomics

Accession

NCBI Assembly:GCF_002355835.1

Type

Single-Cell Amplified Genome (SAG)

Estimated Quality Metrics

• Completeness: 96.63%
• Contamination: 0.0%
• Quality: 96.63

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

422.0 ×

Source

• BioSample: SAMD00051155

Other features

• G+C Content: 35.2%
• Coding Density: 77.11%
• Codon Table: 11
• N50: 1,114,532 bp
• Contigs: 4
• Largest Contig: 1,114,532 bp
• Assembly Length: 1,130,840 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

See additional details

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Last modified 4 days ago

Metadata

Outside links and data sources

• GTDB Genome: GCF_002355835.1
• Wikispecies: Endomicrobiellum trichonymphae (see reference source)

Search sequences

• Seach in NCBI Nucleotide

Local history

• This name was last modified 6 months ago
• Submission process status
• Quality checks before valid publication

Registered by

Mies, Undine Sophie about 1 year ago

Submitted by

Mies, Undine Sophie 6 months ago

Curators

• Rodriguez-R, Luis M (genomics)
• Palmer, Marike (nomenclature)

Validated by

Rodriguez-R, Luis M 6 months ago

Date of priority

2024-05-29 02:02 PM (UTC)