BioSample Accession(s)

SAMN14943690

collection date

2004

depth

1464

derived-from

This BioSample is a metagenomic assembly obtained from the mollusc metagenome BioSample: SAMN15032085

envionmental-sample

1

geo loc name

Pacific Ocean: Monterey Canyon

host

Calyptogena (syn. Ectenagena) extenta

host_tissue_sampled

gill

isolate

Monterey_2004

isolation source

gill tissue

lat lon

36.682 N 122.120167 W

metagenome source

mollusc metagenome

metagenomic

1

sample type

metagenomic assembly

Keywords: GSC:MIxS;MIMS:5.0

BioSample Accession(s)

SAMN15032085

collection date

2004

depth

1464

env_broad_scale

marine

env_local_scale

canyon

env_medium

sediment

geo loc name

Pacific Ocean: Monterey Canyon

host

Calyptogena (syn. Ectenagena) extenta

host_tissue_sampled

gill

isolation source

gill tissue

lat lon

36.682 N 122.120167 W

replicate

population sample 1

Metadata as EBI XML

<EXPERIMENT_SET>
<EXPERIMENT accession="SRX8541219" alias="Cextenta_gill_Illumina" center_name="SUB7473689" broker_name="NCBI">
  <IDENTIFIERS>
    <PRIMARY_ID>SRX8541219</PRIMARY_ID>
    <SUBMITTER_ID namespace="SUB7473689">Cextenta_gill_Illumina</SUBMITTER_ID>
  </IDENTIFIERS>
  <TITLE>Illumina seq of Calyptogena extenta: adult gill DNA</TITLE>
  <STUDY_REF accession="SRP267189">
    <IDENTIFIERS>
      <PRIMARY_ID>SRP267189</PRIMARY_ID>
      <EXTERNAL_ID namespace="BioProject">PRJNA562081</EXTERNAL_ID>
    </IDENTIFIERS>
  </STUDY_REF>
  <DESIGN>
    <DESIGN_DESCRIPTION>custom Illumina Tn5 tagmentation</DESIGN_DESCRIPTION>
    <SAMPLE_DESCRIPTOR accession="SRS6836017">
      <IDENTIFIERS>
        <PRIMARY_ID>SRS6836017</PRIMARY_ID>
        <SUBMITTER_ID namespace="pda|shelbirussell">Cextenta</SUBMITTER_ID>
      </IDENTIFIERS>
    </SAMPLE_DESCRIPTOR>
    <LIBRARY_DESCRIPTOR>
      <LIBRARY_NAME>Cextenta_gill_Illumina</LIBRARY_NAME>
      <LIBRARY_STRATEGY>WGS</LIBRARY_STRATEGY>
      <LIBRARY_SOURCE>GENOMIC</LIBRARY_SOURCE>
      <LIBRARY_SELECTION>RANDOM</LIBRARY_SELECTION>
      <LIBRARY_LAYOUT>
        <PAIRED/>
      </LIBRARY_LAYOUT>
    </LIBRARY_DESCRIPTOR>
  </DESIGN>
  <PLATFORM>
    <ILLUMINA>
      <INSTRUMENT_MODEL>Illumina HiSeq 4000</INSTRUMENT_MODEL>
    </ILLUMINA>
  </PLATFORM>
  <EXPERIMENT_LINKS>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SAMPLE</DB>
        <ID>SRS6836017</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMISSION</DB>
        <ID>SRA1080342</ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-FASTQ-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX8541219&result=read_run&fields=run_accession,fastq_ftp,fastq_md5,fastq_bytes]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
    <EXPERIMENT_LINK>
      <XREF_LINK>
        <DB>ENA-SUBMITTED-FILES</DB>
        <ID><![CDATA[https://www.ebi.ac.uk/ena/portal/api/filereport?accession=SRX8541219&result=read_run&fields=run_accession,submitted_ftp,submitted_md5,submitted_bytes,submitted_format]]></ID>
      </XREF_LINK>
    </EXPERIMENT_LINK>
  </EXPERIMENT_LINKS>
  <EXPERIMENT_ATTRIBUTES>
    <EXPERIMENT_ATTRIBUTE>
      <TAG>ENA-STATUS</TAG>
      <VALUE>PUBLIC</VALUE>
    </EXPERIMENT_ATTRIBUTE>
  </EXPERIMENT_ATTRIBUTES>
</EXPERIMENT>
</EXPERIMENT_SET>