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Vesicomyidisocius calyptogenaeTs

Citation

Formal styling
Vesicomyidisocius calyptogenaeTs corrig. Kuwahara et al., 2007 (priority 2026)
Effective publication
Kuwahara et al., 2007
Corrigendum
Oren, 2017 from “Vesicomyosocius okutanii” (sic)
SeqCode status
Valid (SeqCode)
Register List
seqco.de/r:klbuosg9 (validated)
Canonical URL
https://seqco.de/i:33253

Nomenclature

Rank
Species
Syllabication
ca.lyp.to'ge.nae
Etymology
N.L. gen. n. calyptogenae, of the clam genus Calyptogena
Nomenclatural type
Genome sc|0001404 Ts
Reference strain
Strain sc|0038675: Monterey_2004 Lookup StrainInfo
Nomenclatural status
Validly published under the SeqCode

Taxonomy

Description
An endosymbiont of the deep-sea clam Calyptogena okutanii. Is thioautotrophic and can synthesize almost all amino acids, various cofactors, and other nutrients for the host.
Classification
Bacteria » Pseudomonadota » Gammaproteobacteria » “Gammaproteobacteria_incertae_sedis” » Pseudothioglobaceae » Vesicomyidisocius » Vesicomyidisocius calyptogenaeTs
Parent
Vesicomyidisocius assigned in Kuwahara et al., 2007
Pseudonyms
  • Vesicomyosocius okutanii (Original, corrected name)

Genomics

Accession
NCBI Assembly: GCA_013416595.1 [NCBI | EMBL]
Cultures
Strain sc|0038675
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 97.2%
  • Contamination: 1.9%
  • Quality: 87.7
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
292.0 ×
Source
Other features
  • G+C Content: 30.0%
  • Coding Density: 84.44%
  • Codon Table: 11
  • N50: 604,961 bp
  • Contigs: 2
  • Largest Contig: 604,961 bp
  • Assembly Length: 1,021,947 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
See additional details
Last modified 15 days ago

Metadata

Outside links and data sources
Search sequences
Local history
Registered
Almost 3 years ago by Van Lill, Melandre
Submitted
About 1 month ago by Rasmussen, Ejnar
Curators
Validated
11 days ago by St. John, Emily
Date of priority
2026-08-25 08:31 AM (UTC)

Publications
3

Citation Title
Oren et al., 2020, International Journal of Systematic and Evolutionary Microbiology Lists of names of prokaryotic Candidatus taxa
Oren, 2017, International Journal of Systematic and Evolutionary Microbiology A plea for linguistic accuracy – also for Candidatus taxa
Corrigendum
Kuwahara et al., 2007, Current Biology Reduced Genome of the Thioautotrophic Intracellular Symbiont in a Deep-Sea Clam, Calyptogena okutanii
Effective publication
Assigned this taxon


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seqco.de/r:klbuosg9