JSON

Genome sc|0001413

Name

Aceula lacicolaTs

Database

NCBI Assembly

Accession

GCA_030765785.1

Genomics

Accession
NCBI Assembly:GCA_030765785.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.07%
  • Contamination: 2.9%
  • Quality: 81.57
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 0 23S rRNAs
  • tRNAs for 20 amino acids
Sequencing depth
430.0 ×
Source
Other features
  • G+C Content: 37.2%
  • Coding Density: 93.53%
  • Codon Table: 11
  • N50: 46,173 bp
  • Contigs: 56
  • Largest Contig: 96,469 bp
  • Assembly Length: 1,505,651 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
IMG Annotation pipeline
CheckM1 from Williams et al 2021,  doi 10.3389/fmicb.2021.741077
CheckM2 from Seymour et al 2023,  doi 10.1038/s41564-022-01319-1  
Automated checks
Complete
Last modified over 1 year ago

Sample Metadata

BioSample entries
Date
Collection Date: 2006-12/2015-01 • 2008-12-01 • 2015-01-27 • 2015-08-01 • 2014-12-03 • 2014-12-04 • 2014-10-21 • 2014-10-20 • 2014-08-21 • 2014-08-20 • 2014-07-02 • 2014-02-15 • 2013-12-17 • 2013-11-27 • 2013-11-26 • 2013-11-25 • 2013-11-24
Location
Lat Lon: 68° 28′ 21″ S, 78° 11′ 17″ E
View map of sampling locations
Toponym
Geo Loc Name: Antarctica: Ace Lake
Environment
Sample Type: metagenomic assembly
Isolation Source: saline lake water • Filter • saline lake
Env Broad Scale: aquatic biome [ENVO:00002030]
Env Local Scale: saline lake [ENVO:0000002019]
Env Medium: saline water [ENVO:00002010]
Gold Ecosystem Classification: Environmental | Aquatic | Non-marine Saline and Alkaline | Saline | Unclassified
Other
Not detected
Package
Ncbi Submission Package: MIMAG.6.0 • Metagenome.environmental.1.0
Biosamplemodel: MIMAG • Metagenome or environmental
All retrieved samples
Metadata retrieved over 1 year ago


© 2022-2026 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license
seqco.de/r:2rggbgyb