Genome sc|0001413

Genomics

Accession

NCBI Assembly:GCA_030765785.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.07%
• Contamination: 2.9%
• Quality: 81.57

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 0 23S rRNAs
• tRNAs for 20 amino acids

Sequencing depth

430.0 ×

Source

• BioSample: SAMN34002206

Other features

• G+C Content: 37.2%
• Coding Density: 93.53%
• Codon Table: 11
• N50: 46,173 bp
• Contigs: 56
• Largest Contig: 96,469 bp
• Assembly Length: 1,505,651 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

IMG Annotation pipeline
CheckM1 from Williams et al 2021,  doi 10.3389/fmicb.2021.741077
CheckM2 from Seymour et al 2023,  doi 10.1038/s41564-022-01319-1  

Automated checks

Complete

Sample Metadata

Date

Collection Date: 2006-12/2015-01

Location

Lat Lon: 68.4725 S 78.188 E

Toponym

Geo Loc Name: Antarctica: Ace Lake

Environment

Sample Type: metagenomic assembly

Isolation Source: saline lake water

Env Broad Scale: aquatic biome [ENVO:00002030]

Env Local Scale: saline lake [ENVO:0000002019]

Env Medium: saline water [ENVO:00002010]

Other

Not detected

Package

Ncbi Submission Package: MIMAG.6.0

Biosamplemodel: MIMAG

Additional Accessions

SAMN06267208, SAMN06267209, SAMN06267210, SAMN06267211, SAMN06267212, SAMN06267213, SAMN06267214, SAMN06267215, SAMN06267216, SAMN06267217, SAMN06267218, SAMN06267219, SAMN06267220, SAMN06267221, SAMN06267222, SAMN06343953, SAMN06343954, SAMN06343955, SAMN09200903, SAMN09200904, SAMN09200905, SAMN09200906, SAMN09200907, SAMN09200908, SAMN09200909, SAMN09200910, SAMN09200911, SAMN09200912, SAMN09200914, SAMN09200915, SAMN09200916, SAMN09200917, SAMN09200918, SAMN09200919, SAMN09200920, SAMN09200921, SAMN09200922, SAMN09200923, SAMN09200924, SAMN09200925, SAMN09200939, SAMN09200940, SAMN09200941, SAMN09200942, SAMN09200943, SAMN09200944, SAMN09200945, SAMN09200946, SAMN09200947, SAMN09200948, SAMN09200949, SAMN09200962, SAMN09201091, SAMN09201092, SAMN09201093, SAMN09201094, SAMN09201095, SAMN09201096, SAMN09201097, SAMN09201098, SAMN09201099, SAMN09201100, SAMN09201101, SAMN09201102, SAMN09201103, SAMN09201406, SAMN09201407, SAMN09201408, SAMN09201409, SAMN09201412, SAMN09202328, SAMN09202352, SAMN09202353, SAMN09202354, SAMN09202355, SAMN09202356, SAMN09202357, SAMN09202358, SAMN09202359, SAMN09202360, SAMN09202361, SAMN09202384, SAMN09202385, SAMN09202386, SAMN09202387, SAMN09202388, SAMN09202389, SAMN09202390, SAMN09202391, SAMN09202392, SAMN09202393, SAMN09202415, SAMN09202416, SAMN09202417, SAMN09202418, SAMN09202419, SAMN09202420, SAMN09202421, SAMN09202422, SAMN09202423

All retrieved samples

• SAMN34002206: MIMAG Metagenome-assembled Genome sample from Candidatus Aceula lacicola

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Metadata retrieved about 1 month ago