JSON

Genome sc|0001428

Name

Thermodiscus eudorianus

Database

NCBI Assembly

Accession

GCA_015521085.1

Genomics

Accession
NCBI Assembly:GCA_015521085.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.13%
  • Contamination: 0.11%
  • Quality: 94.58
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 40.0%)
  • tRNAs for 20 amino acids
Sequencing depth
70.01 ×
Source
Other features
  • G+C Content: 54.2%
  • Coding Density: 90.68%
  • Codon Table: 11
  • N50: 272,099 bp
  • Contigs: 10
  • Largest Contig: 418,039 bp
  • Assembly Length: 1,522,352 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Completion and contamination were estimated using CheckM2. RNAs were detected with the Prokaryotic Genome Annotation Pipeline (PGAP). The 16S rRNA gene includes a large (586 bp) intervening sequence (shown in Genbank accession PP060619.1). Completion of the 23S rRNA gene was estimated using the Aeropyrum pernix 23S rRNA gene (NR_103216.2).
Automated checks
Complete

Sample Metadata

BioSample entries
Date
Collection Date: 2018-03
Location
Lat Lon: 34.86107624 S 179.0576384 E
Toponym
Geo Loc Name: Pacific Ocean
Environment
Isolation Source: marine hydrothermal vent
Env Broad Scale: marine hydrothermal vent biome [ENVO:01000030]
Env Local Scale: marine hydrothermal vent [ENVO:01000122]
Env Medium: deep-sea hydrothermal deposit
Other
Depth: 1591.5
Package
Ncbi Submission Package: MIMS.me.water.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.water
All retrieved samples
Metadata retrieved 1 day ago

Sequencing Experiments

Metagenomic sequence data from sample S143


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license