Genome sc|0001429

Genomics

Accession

NCBI Assembly:GCA_031285085.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 94.77%
• Contamination: 0.0%
• Quality: 94.77

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 18 amino acids

Sequencing depth

95.0 ×

Source

• BioSample: SAMN21242732
• BioSample: SAMN19322107

Other features

• G+C Content: 41.95%
• Coding Density: 84.8%
• Codon Table: 11
• N50: 14,449 bp
• Contigs: 154
• Largest Contig: 69,331 bp
• Assembly Length: 1,742,038 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

Sample Metadata

BioSample entries

• BioSample: SAMN21242732
• BioSample: SAMN19322107

Date

Collection Date: 2018-04-18

Location

Lat Lon: 21.61799 N 101.58134 E

Toponym

Geo Loc Name: China: Bubeng

Environment

Sample Type: metagenomic assembly

Isolation Source: termite gut

Env Broad Scale: terrestrial biome

Env Local Scale: woodland biome

Env Medium: tropical woodland biome

Other

Host: Dicuspiditermes spinitibialis

Package

Ncbi Submission Package: MIMAG.host-associated.6.0 • MIMS.me.host-associated.6.0

Biosamplemodel: MIMAG.host-associated • MIGS/MIMS/MIMARKS.host-associated

All retrieved samples

• SAMN21242732: MIMAG Metagenome-assembled Genome sample from Candidatus Methanofilum arcanum
• SAMN19322107: Termite gut metagenome of Dicuspiditermes spinitibialis from Bubeng, China - Xx448

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Metadata retrieved 1 day ago